Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23l04
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 31 0.71
12_01_0652 - 5512187-5512273,5512844-5513950 29 2.9
10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539 29 3.8
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706... 29 3.8
06_01_0581 - 4153668-4153883,4154070-4155104,4155718-4156292,415... 28 5.0
04_04_0537 + 26079926-26079994,26080317-26080500,26081866-260839... 28 5.0
01_06_0966 - 33453963-33456692 28 6.7
11_04_0359 + 16735204-16735676,16736597-16736647,16736860-167369... 27 8.8
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726... 27 8.8
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 27 8.8
>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 31.1 bits (67), Expect = 0.71
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Frame = +2
Query: 212 THNTTYNIKAESSDSPLNRGL-IEETQEQNDYN-CKHMKIMTETFVCNDVPEKM--LRER 379
T + + +K+E DS L+R L +E E D K +K + F D P + +++
Sbjct: 820 TEDMRFTVKSEM-DSELDRALDVEILYEHVDLRRSKRLKTQPDRFTSYDTPRFLSGYKKK 878
Query: 380 ASSAENWQNSDHQVNEEEIWKDAV-DGDSCGVDINEWFGDNQAWCHQPRAEESAISPWG 553
+S+ ++ V+ + D+ + +SC V+I Q H P +E + SP G
Sbjct: 879 EASSSPTKHVRGAVHCDSPVDDSKKEVESCCVEIPGNVTQKQTGVHSPMVDEKSNSPEG 937
>12_01_0652 - 5512187-5512273,5512844-5513950
Length = 397
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 206 SISNSWTLISNHRKTSNFSVSYKILDDIWLLTPVWAVYLPL 84
S++N T++ NH + F + +LDD+W + AV +PL
Sbjct: 267 SVTNRATVLCNHLRNKKFLL---LLDDLWNYIDLEAVGIPL 304
>10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539
Length = 702
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -1
Query: 455 HRQRLSIFLPHSLDGLNSANSQQMMLFPS-TFSLAHHCRQMFQSLFSYAYNYNHFVLVSP 279
H ++ L + + +Q + +PS +F +AH C + + ++N F LVS
Sbjct: 288 HEAQVQFALERGVPAIIGVMGKQRLPYPSRSFDMAH-CSRCLIPWHEFGEHFNTFELVSM 346
Query: 278 Q*VPCSMESLRIRLLYCTL 222
P S +++ +R YC+L
Sbjct: 347 YLAP-SFQAI-LRSKYCSL 363
>07_03_0636 +
20168180-20168462,20168961-20170303,20170401-20170678,
20170790-20170821,20170908-20171314,20171401-20171847
Length = 929
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 206 SISNSWTLISNHRKTSNFS-VSYKILDDIWLLTPVWAVYLPLFNPKQFSCTPNL 48
S+ + W ++ + S+FS S + D +WL+ +L N FS PNL
Sbjct: 301 SLVSRWNNLTRNGGHSSFSSYSMRTYDSVWLVARAVEDFLSEGNAVSFSADPNL 354
>06_01_0581 - 4153668-4153883,4154070-4155104,4155718-4156292,
4158457-4158826,4159925-4160590,4161008-4161223,
4161725-4161793
Length = 1048
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 215 HNTTYNIKAESSDSPLNRGLIEETQEQNDYNCKHMKIMTETFVCNDVPEKMLRERASSAE 394
H + NI A + L++GL +T+E + H+ ++ +T V + KML + + E
Sbjct: 881 HQDSANIVALAEVGRLDQGL--KTEEDRPLDGMHVLLVEDTLVLQTIQRKMLNQLGAIVE 938
>04_04_0537 +
26079926-26079994,26080317-26080500,26081866-26083910,
26084323-26084424,26084566-26084622
Length = 818
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 374 ERASSAEN-WQNSDHQVNEEEIWKDAVDGDSCGVDINEW 487
ER EN W+ ++H + E + ++ GD CG+ +E+
Sbjct: 386 ERQPPTENIWEETEHLKEKTEHNQKSLKGDQCGISGSEY 424
>01_06_0966 - 33453963-33456692
Length = 909
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 257 ESLRIRLLYCTLCYVFFSISNSWTL 183
+ LR+ LLYC+L FSIS W +
Sbjct: 395 DKLRLCLLYCSLFPEEFSISKEWII 419
>11_04_0359 +
16735204-16735676,16736597-16736647,16736860-16736934,
16737011-16737062,16737147-16737280,16737397-16737511,
16737665-16737751,16737855-16737903,16738351-16738435,
16738641-16738715,16738848-16739029,16739905-16739969
Length = 480
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 536 QIPQLVAGGTRPDCHRTTRLCPLRS 462
++P+ TRP C RT CP RS
Sbjct: 51 RLPRAPLPSTRPRCTRTAATCPRRS 75
>04_01_0567 -
7263744-7263922,7264020-7264259,7264919-7264982,
7265088-7265393,7265652-7265866,7266195-7266489,
7266596-7266655,7267091-7267717,7268510-7268596,
7269292-7269612,7270051-7270224,7272806-7275022
Length = 1594
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -2
Query: 571 VRPDLAAPRTYSRFLSSWLV--APGLIVTEPLVYVHSAAVTIDSVFPYFFLIHLM 413
V PD A TY+ F+S+W APG P+V + S +P F L ++
Sbjct: 291 VAPDDTAEATYALFVSNWAAPPAPGTKAGHPVV-----TALLRSFWPQFLLTAML 340
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 347 NDVPEKMLRERASSAE-NWQNSDHQVNEEEIWKDAVDGDSCGVDINEWFGD 496
+D ++ E A AE NW+++ +++ E + DA + D + +EW D
Sbjct: 431 DDSLDRWPNETAEDAERNWEDNAEELHSETMEDDAREHDHLQDEHDEWHDD 481
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,010,029
Number of Sequences: 37544
Number of extensions: 363417
Number of successful extensions: 962
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -