Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23l04
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.1  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 305 NCKHMKIMTETF-VCNDVPEKMLRERASSA 391
           +C+   +  ET   C D+PE+ LR  +  A
Sbjct: 628 SCRQGTVPDETHSACRDIPEEFLRPESGWA 657


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 203 ISNSWTLISNHRKTSNFSVSYKILDDIWL 117
           ++ SW   S  R   N S  Y+ILD  WL
Sbjct: 57  LAQSWR-DSRLRLPENMSEDYRILDVDWL 84



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 511 APGLIVTEPLVYVHSAAVTIDSV 443
           AP  +    +VY H   ++IDS+
Sbjct: 22  APKFLGQPTIVYFHVTVLSIDSI 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,599
Number of Sequences: 438
Number of extensions: 3746
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)