Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23l03
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   1.8  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    27   3.2  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   4.3  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    26   4.3  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   7.5  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   9.9  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    25   9.9  

>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 515 RATVSALLPNPADSCCGLDANVGNKIVGGTATAIDQYPWLIV 640
           R T+S LL + A  C G++ NV +     T+  I+   W +V
Sbjct: 3   RLTISGLLISLAKLCAGMEINVPSSSDVWTSGHIEPLEWSVV 44


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 449 LHFYTWSFVRITCFPSRSEASTF 381
           L  YTW+F R+   PS + AS F
Sbjct: 4   LTIYTWTFRRLPFIPSTNSASFF 26


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 134 NGQSACTASGGGQGTCVDIYKCEPLLALVRKPDRTQQDLE 253
           N +  CT S GG      +      LAL  +PD + +D++
Sbjct: 358 NPEGTCTRSHGGTSAAAPLASAVYALALSIRPDLSWRDIQ 397


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = -2

Query: 457 VLICTFTPGVLY-V*HVFLRGRRPQHLSEVFARVYVYTFSWFTIRCVTFTWTAYQWLPSL 281
           V +C    G  Y +  +F  G  P +   +F   YV    +F+I C+ + W    W P  
Sbjct: 114 VTVCGDIHGQYYDLMKLFEVGGNPANTQYLFLGDYVDR-GYFSIECLLYLWALKIWYPKT 172

Query: 280 KPALR 266
              LR
Sbjct: 173 LWLLR 177


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 618 SIAVAVPPTILFPTLASRPQQESAGL-GSNAET 523
           S+  A PPTI FP     P+++S G  G NA T
Sbjct: 92  SLGTAEPPTITFPL----PEEDSNGFSGQNALT 120


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 385 HLSEVFARVYVYTFSWFTIRCVTFTWTAYQ 296
           HLS +F    +Y FS   +  V+ +W A Q
Sbjct: 176 HLSALFTTCLIYFFSALLVFLVSRSWVAGQ 205


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
 Frame = -1

Query: 494 GVWLKALGHSIHCIDLHFYTWS----FVRITCFPSRSEASTFE*GVRKSICLYIFLVYHP 327
           GVW + + H+ H   ++  +W+       + C  S  + S  E     S    IF  + P
Sbjct: 87  GVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLEFKDDGSCDTRIFTAHEP 146

Query: 326 VCDIHLDSIPMAS 288
            C+    S P  S
Sbjct: 147 GCNAVCWSPPSLS 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,493
Number of Sequences: 5004
Number of extensions: 61751
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)