Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23l03
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0678 - 19971416-19971930,19971970-19973347,19974122-199745...    30   1.9  
04_01_0006 - 112476-114182,114627-114676,115289-115463                 29   2.5  
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879...    29   2.5  
01_01_0870 - 6789903-6792251                                           29   2.5  
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193     29   3.3  
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408...    29   4.4  
06_01_0585 - 4200230-4201282                                           28   5.9  
07_03_0284 + 16249497-16249993,16250950-16251069,16251166-162512...    28   7.7  

>08_02_0678 - 19971416-19971930,19971970-19973347,19974122-19974518,
            19974533-19974645,19977436-19977903,19977935-19978059,
            19978192-19978452,19984254-19984647
          Length = 1216

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -2

Query: 187  IHTRSLTATGGRAR*LSV-CAA*ISRYDCR--KQQRRHF 80
            +HT    A GGRAR   V  A  I++Y  R  KQQ+RH+
Sbjct: 985  VHTAGRIADGGRARGFQVNSAKVINKYQRRYDKQQKRHY 1023


>04_01_0006 - 112476-114182,114627-114676,115289-115463
          Length = 643

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 65  LIKQNKMSPLLFTT--IVAAYLCGANGQSACTASGGGQGTCVDI 190
           ++ Q     L F T  I A Y CG +GQ A    GGG G  V +
Sbjct: 413 VVMQEVQLELAFPTGEITAVYSCG-HGQQAVALGGGGGGAAVSV 455


>03_05_0223 -
           22087076-22087340,22087448-22087726,22087808-22087950,
           22088029-22088133,22088272-22088465,22088561-22088753,
           22088893-22089202,22089335-22089558,22089862-22089990,
           22090019-22090078,22090426-22090617,22091463-22091522,
           22091606-22091688,22092473-22092611,22092949-22093083,
           22093187-22093462
          Length = 928

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 186 ISTNASHCWPSLESLIVLNRIWKL 257
           I  +   CWPSL++L++L R+W L
Sbjct: 597 IKVSGKSCWPSLKTLLLL-RLWSL 619


>01_01_0870 - 6789903-6792251
          Length = 782

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +2

Query: 116 AYLCGANGQSACTASGGGQGTCVD 187
           A+ CG  G  ACTA GGG   CVD
Sbjct: 278 AFFCGDFG--ACTAGGGGGCECVD 299


>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
          Length = 476

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +2

Query: 161 GGGQGTCVDIYKCEPLLALVRKPDRTQQDLEALKKSQCGFQGGKPLVC 304
           GGG+     +Y C     +   P R   DL  +KK  C   G K   C
Sbjct: 119 GGGEPPRKRVYVCPEASCVHHSPSRALGDLTGIKKHFCRKHGEKKWKC 166


>05_01_0490 +
           4083768-4083775,4083845-4084336,4084441-4084522,
           4086671-4087357,4087555-4087813,4088435-4088558,
           4089474-4089564
          Length = 580

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 155 ASGGGQGTCVDIYKCEPLLALVRKPDRTQQDLEALKKSQCGFQGGKPLV 301
           A G  QGTC  +   + LL++  KP+      EAL++++  F G + ++
Sbjct: 114 AFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKII 162


>06_01_0585 - 4200230-4201282
          Length = 350

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +2

Query: 89  PLLFTTIVAAYLCGANGQSACTA--SGGGQG--TCVDIYKCEPLLALVRKPDRTQQDLEA 256
           PLL +  VA+     + Q    A   GGG G  T  +   C   + L +KPD+   +   
Sbjct: 58  PLLLSAPVASLPPSGSVQLRLRALRGGGGDGGATGAESRDCYLSMYLAKKPDKADPNEAR 117

Query: 257 LKKSQCGFQGGKPL 298
           L +  C    G+PL
Sbjct: 118 LSRFTCCALSGEPL 131


>07_03_0284 +
           16249497-16249993,16250950-16251069,16251166-16251298,
           16251867-16252031,16253289-16253459
          Length = 361

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -1

Query: 515 CSCPLEEGVWLKAL--GHSIHCIDLHFYTWSFVRITC 411
           C CP E+G  L+ L   H  HC  +    W  +  TC
Sbjct: 310 CLCPYEDGAELRELPCNHHFHCTCID--KWLHINATC 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,594,191
Number of Sequences: 37544
Number of extensions: 442002
Number of successful extensions: 1237
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)