Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23l02
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 130 3e-31
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 129 6e-31
03_05_1144 + 30719953-30720456 29 1.2
07_01_0385 - 2871628-2872131 28 2.1
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 2.8
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 27 2.8
01_06_0038 - 25819433-25820344 27 5.0
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 26 6.6
07_03_1237 + 25073010-25073513 26 6.6
03_02_0240 + 6721981-6722073,6722657-6722727,6723737-6723898,672... 26 6.6
02_05_0358 + 28264928-28266049 26 8.7
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 130 bits (314), Expect = 3e-31
Identities = 57/89 (64%), Positives = 68/89 (76%)
Frame = +1
Query: 37 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKR 216
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84
Query: 217 CKRTVAGGAWVFPTTAASSCRSAVRRLRE 303
C + AGGA+ T +A + RS +RRLRE
Sbjct: 85 CGKVKAGGAYTMNTASAVTVRSTIRRLRE 113
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 129 bits (311), Expect = 6e-31
Identities = 57/86 (66%), Positives = 66/86 (76%)
Frame = +1
Query: 46 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKR 225
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C +
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92
Query: 226 TVAGGAWVFPTTAASSCRSAVRRLRE 303
AGGA+ T +A + RS +RRLRE
Sbjct: 93 VKAGGAYTMNTASAVTVRSTIRRLRE 118
>03_05_1144 + 30719953-30720456
Length = 167
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 223 RTVAGGAWVFPTTAASSCRSAVRR 294
R +GG W P++ +SSC S++RR
Sbjct: 144 RFYSGGFWRSPSSGSSSCASSLRR 167
>07_01_0385 - 2871628-2872131
Length = 167
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 148 YTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 246
+ C FC K K +G K VAGG+W
Sbjct: 47 FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 127 EVTQHAKYTCSFCGKDAM 180
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 163 CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFPTTAASSCRSAVRRLR 300
C +KR+ G W C RC+ + A +S R RR+R
Sbjct: 58 CLNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRRMR 103
>01_06_0038 - 25819433-25820344
Length = 303
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 217 CKRTVAGGAWVFPTTAASSCRSA 285
C+R GGA FPT AA+ S+
Sbjct: 167 CERAKGGGACAFPTAAAAPSSSS 189
>09_06_0303 -
22149214-22149474,22150099-22150236,22150856-22151100,
22151344-22151809
Length = 369
Score = 26.2 bits (55), Expect = 6.6
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Frame = +1
Query: 16 LLYRRFTKMAKRTKKVG-ITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSC 192
++ RF ++V K G Y L K AKYT G A RS
Sbjct: 62 MMKSRFEAFKANARQVNEFNKKEGMSYTLGLNKFSDMSYEEFAAKYTGGMPGSIADDRSS 121
Query: 193 VGIWSCKRCKRTV 231
G SCK ++ V
Sbjct: 122 AGAVSCKLREKNV 134
>07_03_1237 + 25073010-25073513
Length = 167
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 181 KRSCVGIWSCKRCKRTVAGGAWVFPTTAASSC 276
KR G+ C C RT++GG++ + ++C
Sbjct: 24 KRGAAGV--CNVCDRTISGGSYGYRCGGGAAC 53
>03_02_0240 +
6721981-6722073,6722657-6722727,6723737-6723898,
6724529-6724614,6724808-6724810,6725257-6725270
Length = 142
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 254 GNTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFA-CWVTSIFLTIL 108
G + P + LHR ++ A P+N+ CW +SIF+ I+
Sbjct: 25 GESDLEPIPLRLHRSTIARESKRGATAQQPRNDLSNVGNCWCSSIFMVIV 74
>02_05_0358 + 28264928-28266049
Length = 373
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = +1
Query: 169 KDAMKRSCVGIW-----SCKRCKRTVAGGAWVFPTTAASSCRSAVRR 294
+ A SCV W SC C+ TV+ PT AA++ +A ++
Sbjct: 169 RHAFHASCVDAWLRTTPSCPLCRATVSLPHPPLPTAAAAAASNAAQQ 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,434,741
Number of Sequences: 37544
Number of extensions: 190877
Number of successful extensions: 535
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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