Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23l02
(338 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-2|CAB54440.1| 91|Caenorhabditis elegans Hypothetical ... 146 5e-36
Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical pr... 29 1.1
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 28 1.5
Z81564-6|CAB04572.1| 678|Caenorhabditis elegans Hypothetical pr... 27 4.5
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n... 27 4.5
AF016853-1|AAB94552.1| 678|Caenorhabditis elegans HMP-2 protein. 27 4.5
AF039048-9|AAB94233.1| 362|Caenorhabditis elegans Hypothetical ... 26 6.0
AF039048-8|AAT68896.1| 367|Caenorhabditis elegans Hypothetical ... 26 6.0
AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical ... 26 6.0
AL032639-10|CAA21634.1| 108|Caenorhabditis elegans Hypothetical... 26 7.9
>AL110490-2|CAB54440.1| 91|Caenorhabditis elegans Hypothetical
protein Y48B6A.2 protein.
Length = 91
Score = 146 bits (353), Expect = 5e-36
Identities = 62/90 (68%), Positives = 76/90 (84%)
Frame = +1
Query: 40 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 219
MAKRTKKVGI GKYGTRYGASLRKM KK+EV QH++YTCSFCGK+AMKR GIW+C +C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKC 60
Query: 220 KRTVAGGAWVFPTTAASSCRSAVRRLREVK 309
+ VAGGA+V+ T A++ RS +RRLR++K
Sbjct: 61 HKVVAGGAYVYGTVTAATVRSTIRRLRDLK 90
>Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical
protein T13H5.4 protein.
Length = 500
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 24 SEVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLLILW 167
++ Y+ + +QK +N W+ H +RCL N +N T+ L LW
Sbjct: 412 NQTYKGPKAFQKHFNEWRHSHGMRCLGIPN-TSHFANITKIKDALDLW 458
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 136 QHAKYTCSFCGKDAMKRSCVGIWSCKRC 219
++ KY C+ C R G+WSCK C
Sbjct: 229 ENNKYECAICYTRITTRQ--GVWSCKTC 254
>Z81564-6|CAB04572.1| 678|Caenorhabditis elegans Hypothetical
protein K05C4.6 protein.
Length = 678
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 317 LNYFTSRNLLTADLHDEAAVVGNTQAPPATVLLHRL 210
L+ + + A D+ VGN + PP LLHRL
Sbjct: 506 LHQLANHPAVAAACCDDIGQVGNPECPPFLDLLHRL 541
>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 15
protein.
Length = 1217
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 254 GNTQAPPATVLLHRLQDQMPTQERFIASLPQNEQV 150
G T PP H+ Q Q P + +A PQN Q+
Sbjct: 747 GQTNGPPPP---HQQQQQQPVRVAQVAQQPQNMQI 778
>AF016853-1|AAB94552.1| 678|Caenorhabditis elegans HMP-2 protein.
Length = 678
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 317 LNYFTSRNLLTADLHDEAAVVGNTQAPPATVLLHRL 210
L+ + + A D+ VGN + PP LLHRL
Sbjct: 506 LHQLANHPAVAAACCDDIGQVGNPECPPFLDLLHRL 541
>AF039048-9|AAB94233.1| 362|Caenorhabditis elegans Hypothetical
protein F16B4.2a protein.
Length = 362
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 181 KRSCVGIWSCKRCKRTVAGGAWVFPTT 261
K C+ W+C C +T+ +W F +T
Sbjct: 333 KEKCILDWTCSTCDKTIE--SWYFRST 357
>AF039048-8|AAT68896.1| 367|Caenorhabditis elegans Hypothetical
protein F16B4.2b protein.
Length = 367
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 181 KRSCVGIWSCKRCKRTVAGGAWVFPTT 261
K C+ W+C C +T+ +W F +T
Sbjct: 338 KEKCILDWTCSTCDKTIE--SWYFRST 362
>AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical
protein C15F1.5a protein.
Length = 381
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 103 LRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFPT 258
L+K KKM V A S + M +C G + C+R + G A + T
Sbjct: 32 LKKSTKKMRVCPVAHCYSSLTAPEPMTSTCEG----ENCQRKIMGNAEILRT 79
>AL032639-10|CAA21634.1| 108|Caenorhabditis elegans Hypothetical
protein Y38F1A.9 protein.
Length = 108
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 82 GTRYGASLRKMVKKMEVTQHAK 147
G RY + ++KMV K VT H K
Sbjct: 46 GDRYVSKIKKMVGKFTVTLHIK 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,043,014
Number of Sequences: 27780
Number of extensions: 167705
Number of successful extensions: 523
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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