Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23l01
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.16
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.37
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 28 1.1
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom... 27 2.0
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 27 2.0
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 3.5
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 3.5
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 6.1
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 25 6.1
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 25 8.1
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 8.1
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.16
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = -3
Query: 577 TSPSKSSESTV*LTLNVTRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATIS 398
TSP+ +S S+ ++ N T ++ S T+S P T TS TF + S + S
Sbjct: 605 TSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTST----TFTSSTSISTS 660
Query: 397 SVRNSTSSLS 368
S +TSS S
Sbjct: 661 SSSTATSSTS 670
Score = 28.7 bits (61), Expect = 0.65
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = -3
Query: 577 TSPSKSSESTV*LTLNVTRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATIS 398
TS S ++ S+ + S+++ T S P P T PST +T +L S +
Sbjct: 659 TSSSSTATSSTSFASESSSFYSNVTTSSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNN 718
Query: 397 SVRNSTSSLS 368
S T+S S
Sbjct: 719 STEVKTASTS 728
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.5 bits (63), Expect = 0.37
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -3
Query: 574 SPSKSSESTV*LTLNVTRIVSSLSCFVKTT-SAPSPFTVKPSTSAGRDLTFCALRSATIS 398
S S +S S +LN T ++ S + +T S+ +P T ST+A SAT S
Sbjct: 219 SNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSA------SATSS 272
Query: 397 SVRNSTSSLSP 365
S + +TSSL P
Sbjct: 273 SAQYNTSSLLP 283
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 27.9 bits (59), Expect = 1.1
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = -3
Query: 517 VSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSPR 362
V+ LS K+ S V S+++G ++ + SA ISS++NST SPR
Sbjct: 1347 VNMLSHKRKSASTSDRRFVNASSTSGMNMPISSSISAKISSIQNST-KYSPR 1397
>SPBC776.07 |||mitochondrial Mam33 family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 27.1 bits (57), Expect = 2.0
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 375 ELVEFLTEEIVAERKA--QKVKSLPAEVEGFTVKGDGAEVVLTKQLKDETIRVTFNVNHT 548
+L+ L+ EI E+ ++ P + V+G A VVL + DE IR+T NV+
Sbjct: 60 KLINALSSEIDYEKNQVLSEISLPPVNYDIEDVQGS-AVVVLKAKHGDENIRITMNVSQD 118
Query: 549 V 551
V
Sbjct: 119 V 119
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 469 FTVKPSTSAGRDLTFCALR--SATISSVRNSTSSLSPRGLGLMEC 341
F++ P A TFCAL S + + NS+ + S + LM+C
Sbjct: 186 FSLLPYGEAHAGATFCALASWSLILKMIPNSSLNTSNQSYNLMDC 230
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 3.5
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 336 DEHSIKPKPLGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLK 509
+E + + ERE+ E L E+ K V +LPA V T KGD + LTK +
Sbjct: 137 EERTSQEDVKSEREVAEKLANELEKSDKTVFVNNLPARV--VTNKGDYKD--LTKHFR 190
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 527 DTNCFIFKLLC*NNFSTVSLYSKAFDFSRERL--DLLCFAFSNYFFCQELY 381
+TN F++ + C + TVSL S A + D +C+ + N EL+
Sbjct: 15 ETNDFLYLMRCCYMYDTVSLVSNAPNIYSIPFFYDRICYDYKNILLKYELF 65
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 6.1
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Frame = +3
Query: 330 KEDEHSIKPKPLGERELVEFLTEEI-------VAERKAQKVKSLPAEVEGFTVKGDGAEV 488
KE ++ I K L E+++ E ++ + +KAQK A+V T+ G G ++
Sbjct: 1305 KELQNKINEKNLAEQKVEELQSQSFTKNKEVDLLRKKAQKAILKQADVVCATLSGSGHDL 1364
Query: 489 VLTKQLKDETI 521
V L T+
Sbjct: 1365 VAHSSLNFSTV 1375
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 6.1
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Frame = -3
Query: 577 TSPSKSSESTV*LTLNVTRIVSSLSCFVKTTSAPSPFTVKPSTSAG--RDL----TFCA- 419
T S SS + + + ++S+S +T PS V+PSTS D+ +F A
Sbjct: 117 TGTSNSSRTRLNKDMRRDFGMTSMSSITSSTPTPSQLPVRPSTSLSFFDDIPLGPSFSAE 176
Query: 418 --LRSATISSVRNSTSSLSP 365
L S +IS+ N+ S +P
Sbjct: 177 TILSSLSISTSNNAMSKTTP 196
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 187 FTA-VCVRLTNPLKFAVLTHVCSTLWVALTMPLIFPA 80
FTA VCV NPL+ ++ V ++ + +T P++F A
Sbjct: 101 FTAWVCV---NPLEKSIFGKVAFSVTIGITCPIVFIA 134
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 187 FTAVCVRLTN-PLKFAVLTHVCSTLWVALTMPL 92
FT + + N P+ + VCS W+ L+ PL
Sbjct: 257 FTPILYKTNNNPIILPITVTVCSCWWLILSTPL 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,677
Number of Sequences: 5004
Number of extensions: 45368
Number of successful extensions: 151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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