Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23l01
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1354 - 26337628-26338540,26339638-26339981 32 0.29
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019 30 1.2
07_01_0945 - 7973736-7974275,7974446-7974580 29 2.7
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971... 29 3.6
08_02_0417 - 16904476-16904662,16904846-16905029,16905150-169058... 29 3.6
04_04_0056 + 22406872-22407258,22408405-22409310 29 3.6
07_03_0716 + 20905041-20905851,20906644-20906825,20907117-209073... 28 4.7
10_08_0410 - 17716370-17716743,17716839-17716939,17717104-177173... 28 6.2
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286... 28 6.2
07_01_0888 + 7398538-7399405,7400232-7400333,7400463-7400641,740... 27 8.2
01_06_0179 + 27250706-27251593,27252172-27252462,27252510-272525... 27 8.2
>08_02_1354 - 26337628-26338540,26339638-26339981
Length = 418
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 481 APSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSP 365
+PSP T PST+ GRD C R + + N +L+P
Sbjct: 168 SPSPATRSPSTTLGRDRYCCLTREDIVRFLINCLGALAP 206
>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
Length = 508
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +3
Query: 378 LVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQL 506
LV F+ ++ E K + ++ L E+E F + +G+EV L++ +
Sbjct: 461 LVGFIFTLLLPESKGKSLEDLTGEIEEFQEEDEGSEVALSRPI 503
>07_01_0945 - 7973736-7974275,7974446-7974580
Length = 224
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 318 CEAPSTRSRSCKYWNGCVASWWKPGSHLTFESSSCAI 208
C P S + W GC A+W P + L+ S S A+
Sbjct: 166 CRWPRVASTGARQWQGCHAAWLSPVAPLS-SSLSAAV 201
>10_08_0352 + 17091637-17091945,17092049-17096617,17096975-17097187,
17097266-17097494,17097857-17097981
Length = 1814
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 303 LKALHTKADKEDEHSIKPKPLGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGA 482
+K + +KE+E +I P +RE++ T+ IV E+ + + G + G GA
Sbjct: 1662 VKPISPPPEKEEEEAISPPQPPKREIIRVTTKAIVKEKASAFSSVGSSSSSGKSGAGGGA 1721
>08_02_0417 -
16904476-16904662,16904846-16905029,16905150-16905897,
16906003-16906227,16906318-16906485,16906803-16907453
Length = 720
Score = 28.7 bits (61), Expect = 3.6
Identities = 23/73 (31%), Positives = 30/73 (41%)
Frame = -3
Query: 571 PSKSSESTV*LTLNVTRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSV 392
PS S +S V + + S + + + PSP K STS L S SS
Sbjct: 531 PSPSPQSPV--SARTSSATPSPTARTPSPAPPSPIATKTSTSVVLSLAAVRATSPATSSP 588
Query: 391 RNSTSSLSPRGLG 353
+TSSL G G
Sbjct: 589 PRATSSLPLVGAG 601
>04_04_0056 + 22406872-22407258,22408405-22409310
Length = 430
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 517 VSSLSCFVK-TTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSPR 362
+SS SC TT+AP P T + +AG CA +AT + V L R
Sbjct: 29 LSSSSCAASPTTAAPVPGTAPRAAAAGDGDEGCAAAAATPADVGGDEDDLRSR 81
>07_03_0716 +
20905041-20905851,20906644-20906825,20907117-20907330,
20907416-20907653,20907905-20908058,20908190-20908461,
20908703-20908808
Length = 658
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +3
Query: 192 DFTRGIWHMSCSRRL---DGTLASTSLLHNHSNTCSCGCGLKALHTKADKE 335
DF +G ++ S+RL DG LHNHS C LKA + D +
Sbjct: 403 DFVKGA-QLTWSKRLRIIDGIAQGILYLHNHSRVCVVHRDLKASNILLDSD 452
>10_08_0410 -
17716370-17716743,17716839-17716939,17717104-17717300,
17717392-17717677,17717768-17718004,17718226-17718281,
17720042-17721226
Length = 811
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 354 PKPLGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQL 506
P P E EL E EE+ + + +P EG V G G +V +++
Sbjct: 36 PPPPAETELTEQREEEVPVDDVVEAAADVPRREEGLVVDG-GEDVYYARRM 85
>03_01_0369 -
2863159-2863491,2864149-2864214,2865045-2865140,
2865530-2865632,2865771-2865838,2866570-2866712,
2867050-2867242,2867602-2867640,2867742-2867807,
2868617-2869651
Length = 713
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 493 KTTSAPSPFTVKPSTSAGRDLTFCALRSATISS 395
+ + PS + + + GR LTF LRSA +S+
Sbjct: 41 RADACPSAVALADAAAGGRALTFAELRSAVLST 73
>07_01_0888 +
7398538-7399405,7400232-7400333,7400463-7400641,
7400899-7400959,7401207-7401444,7401649-7401802,
7401971-7402249
Length = 626
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +3
Query: 162 VSRTQTAVKRDFTRGIWHMSCSRRL---DGTLASTSLLHNHSNTCSCGCGLKALHTKADK 332
V R +DF +G ++ S+RL DG LHN+S C LKA + D
Sbjct: 394 VKRLSACSVQDFVKGA-QLTWSKRLHIIDGIAQGILYLHNYSRLCVVHRDLKASNILLDS 452
Query: 333 E 335
+
Sbjct: 453 D 453
>01_06_0179 +
27250706-27251593,27252172-27252462,27252510-27252575,
27252732-27252871,27254709-27254814,27254898-27254990,
27255398-27255487,27256403-27256525,27256708-27256781,
27256878-27256932,27257087-27257322,27257959-27258088,
27258170-27258272,27258428-27258525,27258973-27259038,
27259252-27259419
Length = 908
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 304 NPQPQLQVLEWLCSKL-VEARVPSN-LREQLMCHIPLVKS 191
N P++ ++ W C K+ A +P L E L+ IPL+ S
Sbjct: 525 NLNPEVVIMHWACEKITASAAIPDTVLLEGLLDKIPLLLS 564
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,810,104
Number of Sequences: 37544
Number of extensions: 306287
Number of successful extensions: 840
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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