Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23k24
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    28   0.31 
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   0.54 
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    27   0.95 
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   2.9  
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    24   5.1  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    24   5.1  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    24   6.7  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    23   8.8  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    23   8.8  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    23   8.8  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    23   8.8  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 28.3 bits (60), Expect = 0.31
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +2

Query: 35   TQTKMLFNILFSFCSCESKNNENNIVNDAFPSSD-HLFGIAGTLLVTAVCWVLFKMLKSR 211
            ++ K   N+   F +   KNNEN++ +  F  S  + F I      TA   +  + L+ R
Sbjct: 784  SKRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLYPFTIRHLGAYTASYTLYVESLQLR 843

Query: 212  S---RKSNVHRCRHAREFNTHN 268
                 K NV + RH+++ N  N
Sbjct: 844  KLWVEKINVAKKRHSQKINIKN 865


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 27.5 bits (58), Expect = 0.54
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 53  FNILFSFCSCESKNNENNIVND 118
           FN +  F +   K NENNI ND
Sbjct: 783 FNFVSPFAAVSEKTNENNIPND 804


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 0.95
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 170 SPVAFLLSRTNDQN*GKHR*QYCFHYFYFRNCKKK 66
           SP+  LL R +      HR  YC++Y    N  ++
Sbjct: 13  SPITHLLKRCSSVTDNVHRVNYCYNYHTVPNLSQR 47


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 11  CLLSNFKCTQTKMLFNILFSFCSCESKNNENNIVNDA 121
           C L      +  ++ N+LFSF SC  K  ++  +  A
Sbjct: 460 CYLMKQTSPEPLLIRNLLFSFWSCNGKIEQDGKIKTA 496


>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 48  CYLISYFLFAVAKVKIMK-TILSTMLSLVLII 140
           CY I+ F+F V  +K  K  +L TM SL+ ++
Sbjct: 81  CYAIACFMFPVLVLKPRKFVLLWTMGSLLAVL 112



 Score = 24.2 bits (50), Expect = 5.1
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = +3

Query: 18  FQILSVLKRKCYLISYF--LFA--VAKVKIMKTILSTMLSLVLII 140
           F+ L+ ++R    +SYF  L A  +A +KI  TILS +  ++ I+
Sbjct: 124 FRQLTTMERLPITLSYFVTLLATIIATIKIKSTILSIVFGVLHIL 168


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +2

Query: 86  SKNNENNIVNDAFPSSDHLFGIAGTLLVTAVCWVLFKMLKSRSRKSNVHRCRHAREFNTH 265
           SKN   + V   F  S HL+    T  +    W +  +L +    S+      AR+F + 
Sbjct: 818 SKNKRFDAVQRVFEHSKHLYRKISTKSLEKANWFMALILDAMILSSS-----FARQFKSS 872

Query: 266 NRIC 277
           N  C
Sbjct: 873 NLFC 876


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 185 VLFKMLKSRSRKSNVHRCRHAREFNTHN 268
           +LF +L + SR+++ H  +H    + HN
Sbjct: 539 ILFLILDTPSRETDEHLAQHVTYVHMHN 566


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 83  ESKNNENNIVNDAFPSSDHLFGIAGT 160
           ES  N+  +  D F SS+H+   AGT
Sbjct: 417 ESTLNQLLVEMDGFTSSEHIVVFAGT 442


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 50  LFNILFSFCSCESKNNENNIVNDAFPSSDH 139
           + N LF   +C S +NE+ ++N      +H
Sbjct: 646 IHNTLFCIYACHSSSNESYLMNYIEQQGNH 675


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 86  SKNNENNIVNDAFPSSDHLFGIAGTLLVTAVCWV 187
           SK  +NN+VNDA   +D     A    V AV  V
Sbjct: 208 SKYYQNNMVNDATTPNDSSTTEAAAAAVAAVAAV 241


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 219 NQMSTDVDMQENLIHTIVYVHDNN 290
           NQ+S ++  Q+NL+ T + V D N
Sbjct: 327 NQLSNNLAYQQNLLFTSLNVSDLN 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,284,640
Number of Sequences: 5004
Number of extensions: 23791
Number of successful extensions: 72
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)