Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23k24
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83111-1|CAB05532.1|  331|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass...    26   5.6  
AC006761-6|AAF60548.2|  242|Caenorhabditis elegans Hypothetical ...    26   5.6  
U21322-4|AAA62540.2|  508|Caenorhabditis elegans Hypothetical pr...    26   7.4  
AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine re...    26   7.4  
AC006617-9|AAF39767.1|  409|Caenorhabditis elegans Hypothetical ...    26   7.4  

>Z83111-1|CAB05532.1|  331|Caenorhabditis elegans Hypothetical
           protein F57G8.1 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 140 LFGIAGTLLVTAVCWVLFKMLKSRSRKSN 226
           + G    LLV+A+CW LF M+ S+S  +N
Sbjct: 206 IVGFQVFLLVSAICWKLFHMV-SQSEATN 233


>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 177 protein.
          Length = 1667

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +3

Query: 27  LSVLKRKCYLISYFLFAVAKVKIMKTILSTMLSLVLIIC 143
           L VLK++ + IS+ L +   + IM T  S  +SL+ IIC
Sbjct: 93  LPVLKQEVHNISFELSSSDVLAIMYTKESETISLLKIIC 131


>AC006761-6|AAF60548.2|  242|Caenorhabditis elegans Hypothetical
           protein Y41G9A.2 protein.
          Length = 242

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 7/20 (35%), Positives = 17/20 (85%)
 Frame = -2

Query: 160 RSCYPEQMIRTRESIVDNIV 101
           ++CYP + +++R S+VD+++
Sbjct: 103 QACYPHEPLKSRYSVVDSVL 122


>U21322-4|AAA62540.2|  508|Caenorhabditis elegans Hypothetical
           protein K10D2.2 protein.
          Length = 508

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 224 LISCFSILTF*KEPSTLQSPVAFLL 150
           LI CF  L   K P+ L+ P AF L
Sbjct: 62  LIECFGNLAVTKRPAHLRPPAAFCL 86


>AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine
           receptor, class v protein4 protein.
          Length = 321

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 48  CYLISYFLFAVAKVKIMKTILSTM 119
           C+L+S FL+ +  V +++T+  TM
Sbjct: 192 CFLVSSFLYLITFVHLVQTLPKTM 215


>AC006617-9|AAF39767.1|  409|Caenorhabditis elegans Hypothetical
           protein C39B5.2 protein.
          Length = 409

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 65  FSFCSCESKNNENNIVNDAFPSSDHL 142
           FS CS ++K+   NI  DAF    H+
Sbjct: 59  FSVCSPKTKSTTENIQKDAFIMMKHI 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,259,870
Number of Sequences: 27780
Number of extensions: 139398
Number of successful extensions: 312
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)