Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23k20
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    24   1.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.4  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 41  NYVNLYDMYQNHNKRMSVGIN 103
           NY N  + Y N+NK++   IN
Sbjct: 93  NYNNYNNNYNNYNKKLYYNIN 113



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 127 LNATYSFN*YDDENGNA*NYGK 192
           L+  Y+++ Y++ N N  NY K
Sbjct: 85  LSNNYNYSNYNNYNNNYNNYNK 106


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 32  RCDNYVNLYDMYQNHNKRMSVGINRGDN 115
           RC N+ N  + + NHN   +   ++ DN
Sbjct: 413 RCANFDNQDNNHYNHNHNQARHSSKSDN 440


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 595 FLQIRLRDLRRKRLCGGRKDAT 530
           F  I+LR L +++LC  RK+ +
Sbjct: 67  FGAIQLRQLLKRQLCEKRKEVS 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,378
Number of Sequences: 438
Number of extensions: 2956
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)