Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23k18
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2...    48   2e-06
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc...    44   1e-05
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    39   5e-04
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    38   0.001
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    37   0.003
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    35   0.012
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    34   0.015
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    34   0.020
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    33   0.047
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    33   0.047
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    30   0.25 
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    29   0.58 
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    27   1.8  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    27   2.3  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   9.5  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    25   9.5  

>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
 Frame = -1

Query: 482 MYLKPLQGAIATTMTQPVDVLKTRAMNAKPGEIKSILSLVKNTAK-ESPLAFFKGYIPAF 306
           +++       A     P+ V++TR +       +SI++LV  T + +  L F+KG++P  
Sbjct: 190 IFMSAASKVFAAVNMYPLLVIRTR-LQVMRSPHRSIMNLVLQTWRLQGILGFYKGFLPHL 248

Query: 305 VRLAPHTILTFVFLEQLRMNFGILKSQS 222
           +R+ P T +TF+  EQ+ M+F    S+S
Sbjct: 249 LRVVPQTCITFLVYEQVGMHFKTQSSKS 276


>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 300

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = -1

Query: 479 YLKPLQGAIATTMTQ-PVDVLKTRAMNAKPGEIKSILSLVKNTAK-ESPLAFFKGYIPAF 306
           +   + GA A+ +   P+DV+KTR  N      +S  +++KN  K E P +FFKG  P  
Sbjct: 215 FFTSIAGASASLIVSAPLDVIKTRIQNKNFDNPQSGFTILKNMLKFEGPTSFFKGLTPKL 274

Query: 305 VRLAPHTILTFVFLEQL 255
           +   P  + +F   + L
Sbjct: 275 LTTGPKLVFSFTMAQTL 291


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = -1

Query: 455 IATTMTQPVDVLKTRAMNAKPGEI--KSILSLVKNTAKESPLAFFKGYIPAFVRLAPHTI 282
           +  TM Q  D + TR  N K  E+    I  ++K    E   A +KG+     R+APHTI
Sbjct: 243 VCCTM-QIFDTVMTRMYNQKNKELYKNPIDCILKTIRSEGFFALYKGFGAHLARIAPHTI 301

Query: 281 LTFVFLEQLRMNF 243
               F+EQ    F
Sbjct: 302 FCLTFVEQTNKLF 314


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = -1

Query: 467 LQGAIATTMTQPVDVLKTRAMNAKPGEIKSILSLVKNTAKESPLAFFKGYIPAFVRLA 294
           + G IA  +T P DV+KTR M ++   +  + ++    A E  LA +KG +P  + L+
Sbjct: 267 IAGGIAAALTTPFDVVKTRIMTSQQ-RLSYVFTIKSIVAHEGFLALYKGIVPRVLWLS 323


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
 Frame = -1

Query: 503 EILGFKIMYLKPLQGAIATTMTQPVDVLKTR-AMNAKPG---EIKSILSLVKNTAK-ESP 339
           ++  F+ ++L    G I  T+T P DVL+ R  +N  PG     K+I S + +  K E  
Sbjct: 223 DLTAFQKLFLGGFTGIIGQTLTFPADVLRRRFQVNRIPGIGHNYKNIKSAIFHIYKTEGI 282

Query: 338 LAFFKGYIPAFVRLAPHTILTFVFLE 261
             FF+GY    +++ P   +T+   E
Sbjct: 283 NGFFRGYSSNMLKIIPVMSITWYTYE 308


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = -1

Query: 467 LQGAIATTMTQPVDVLKTRAMNAKPGEIKSILSLVKNTAKESPLAFFKGYIPAFVRLAPH 288
           L G I++T  QP+D+LKTR   ++   +  ++  +    +    + +KG +P+ +R    
Sbjct: 23  LGGFISSTTLQPLDLLKTRCQQSQRDSLPKMVRRI-ILHEGGVFSLWKGTLPSILRSTTG 81

Query: 287 TILTFVFLEQLR 252
           +   F FL  LR
Sbjct: 82  SSCYFYFLNWLR 93



 Score = 31.9 bits (69), Expect = 0.083
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -1

Query: 467 LQGAIATTMTQPVDVLKTRAMNAKPGEIKSILSLVKNT-AKESPLAFFKGYIPAFVRLAP 291
           + GA AT +T P D+LKTR +  +P   K+ L   K   A E    F  G+    +R + 
Sbjct: 219 ISGATATAITNPFDMLKTR-VQLEPHIYKNFLHSAKLVYANEGFRGFLDGFFLRVLRKSI 277

Query: 290 HTILTFVFLE 261
            + +T+   E
Sbjct: 278 SSTITWSVYE 287



 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 434 PVDVLKTRAMNAKPGEIKSILSLVKNTAKESPLA-FFKGYIPAFVRLAPHTILTFVFLEQ 258
           PV V+K R   +      +I S +++  K+  ++ FF+G+    +R APH  L   F E 
Sbjct: 126 PVTVIKVR-YESNLYSYTTIYSSIRDIWKKEGISGFFRGFGVTALRDAPHAGLYVYFYEL 184

Query: 257 LRMN 246
            + N
Sbjct: 185 SKQN 188


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 34.3 bits (75), Expect = 0.015
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = -1

Query: 491 FKIMYLKPLQGAIATTMTQPVDVLKTRAMNAKPGEIKSILSLVKNTAK-ESPLAFFKGYI 315
           F I+    L    A+T+T P +VL+TR  +       S   L+++  + E    ++ G  
Sbjct: 287 FHIVLAATLSKIAASTVTYPHEVLRTRLQSLDAPTHNSATLLIRDIWRSEGWRKYYSGMA 346

Query: 314 PAFVRLAPHTILTFVFLEQLR 252
             F+R  P + +TF+  E +R
Sbjct: 347 TNFIRTIPASSVTFLSFEIVR 367


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
 Frame = -1

Query: 485 IMYLKPLQGAIATTMTQPVDVLKTRAM----NAKPGEIKSILS-LVKNTAKESPLAFFKG 321
           +M    L G+   T+  P++V++TR      +A P      +    K T  E     +KG
Sbjct: 338 VMAFGALSGSTGATIVFPLNVIRTRLQTQGTSAHPATYDGFIDCFYKTTKNEGFRGLYKG 397

Query: 320 YIPAFVRLAPHTILTFVFLEQLRMNFGI 237
             P  +++AP   ++++  E  +   G+
Sbjct: 398 LSPNLLKVAPSVAISYLVYENCKKWLGL 425


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -1

Query: 467 LQGAIATTMTQPVDVLKTRAMNAKPGEIKSILSLVKNTAKESPLAFFKGYIPAFVRLAP 291
           + G +AT +TQP DV KT A       +     ++    +  P A +KG +P  V++AP
Sbjct: 255 ISGTLATLLTQPFDVSKT-AKQVHGHTLTRGQFMLTLWKRGGPKALWKGTLPRCVKVAP 312


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
 Frame = -1

Query: 467 LQGAIATTMTQPVDVLK----TRAMNAKP--GEIKSILSLVKNTAKESPL-AFFKGYIPA 309
           L GAIA+++T P+DV+K    TR  ++ P   + K  L +V+       + +FFKG  P 
Sbjct: 213 LSGAIASSLTTPLDVVKTLLQTRGSSSIPEVRKCKGSLDVVRFIYNYGGIPSFFKGIRPR 272

Query: 308 FVRLAPHTILTFVFLE 261
            V   P T +++   E
Sbjct: 273 MVVAMPATAVSWAAYE 288


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
 Frame = -1

Query: 461 GAIATTMTQPVDVLKTRAMNAK--PGEIK----SILSLVKNTAKESPLAFFKGYIPAFVR 300
           G   T ++ P DV+K+R        G++     +  +LV    +E   A +KG++P  +R
Sbjct: 210 GIFGTFLSTPFDVIKSRIQTVPRIAGQVPKYNWAYPALVTVAREEGFTALYKGFVPKVLR 269

Query: 299 LAP-HTILTFVF 267
           L P   IL  VF
Sbjct: 270 LGPGGGILLVVF 281


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = -1

Query: 509 RMEILGFKIMYLKPLQGAIATTMTQPVDVLKTRAMN---AKPGEIKSILSLVKNTAKESP 339
           R +  G+K+       G        P D++K++            K+     K    ++ 
Sbjct: 207 RSQTPGWKLCVFGAGAGYAMWLAAYPFDIVKSKIQTDGFLSKATYKNSWQCAKGIYTKAG 266

Query: 338 L-AFFKGYIPAFVRLAPHTILTFVFLE 261
           L  F++G++P  VR AP   +TF   E
Sbjct: 267 LRGFYRGFVPVLVRAAPANAVTFYVYE 293


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 395 ASRSLPWSLGRPRAESLLLLSH 460
           A  S PW+LGR R  SL+ L H
Sbjct: 564 ARASRPWNLGRERQSSLIDLRH 585


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -1

Query: 467 LQGAIATTMTQPVDVLKTRAMNAKPGEIKSILSLVKNTAKESPL-AFFKG 321
           L GAI   +  P+DV+KT+ +N +P   +S   +V+   KE+ +  F KG
Sbjct: 176 LSGAITAAVLTPLDVIKTQ-INLRP---ESYRKVVRRIYKENGIFGFEKG 221


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 24   KLTFLHKIKILNY*IKLPRQL*LFHFVNFRENYHWN 131
            KL   + +   NY +K  + L LFHF++     +W+
Sbjct: 1838 KLIVQNAVTYSNYLLKSIKTLPLFHFLDLNVTEYWD 1873


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 96  ETVIVASAILFNNLRFLFYEGKLILCYILTFL 1
           +T IVA+ + F N R   + G     +I+T L
Sbjct: 65  KTFIVAALLAFENSRLTVFAGSYSALFIMTLL 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,814
Number of Sequences: 5004
Number of extensions: 52995
Number of successful extensions: 152
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)