Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23k15
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 29 0.40
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ... 29 0.53
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 28 1.2
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 27 1.6
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 2.1
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 27 2.1
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 2.8
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 26 3.7
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 3.7
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 26 3.7
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 26 5.0
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 26 5.0
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 26 5.0
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 26 5.0
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 6.5
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 25 6.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 6.5
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 6.5
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.7
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 8.7
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 29.5 bits (63), Expect = 0.40
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +2
Query: 197 KRMTEKGFEGEQSTSSWDVPGPSSLGAILDTAFTSSADNQQRNEEMECDALFAESDDE 370
K T G S S D SSL D F ++ N+E+E AE+D+E
Sbjct: 41 KNTTSSGSSESDSMSQNDKKKDSSLNESEDEDFAGFGESASENDELESAESEAENDEE 98
>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
cytochrome c oxidase assembly Pet191
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 85
Score = 29.1 bits (62), Expect = 0.53
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 525 QCLKNIKPLPDSSSSIENAYYECLKQL 605
+CLKN LP+ ++ AY EC +Q+
Sbjct: 31 ECLKNKDELPEECKNLIEAYGECKRQM 57
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +2
Query: 380 LPTSDIASNILNEQVPKPVSSNYVNSTISNP--TF-DVNLQPLSEPS 511
+PTS+ +S+I N + PVSS + +NP TF +L +S PS
Sbjct: 193 IPTSEASSSINNTPLQAPVSSFADQNAFTNPLSTFASPDLASVSSPS 239
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 371 VEVLPTSDIASNILNEQVPKPVSSNYVNSTISNPTFDVNLQP 496
V+ PTSD+ S + S N N+ IS TF +L P
Sbjct: 202 VDSFPTSDVRSLVAGTPATDDFSHNKPNNQISISTFYSSLDP 243
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +2
Query: 353 AESDDEVEVLPTSDIASNILNEQVPKPVSSNYVNSTISNPTFDVNLQPLSEPSSAHTPVP 532
AES + TS S +VP+ + ++VN T DVNL P S +S+ + +P
Sbjct: 489 AESTKIPKKQHTSAYESRAPQSKVPENLKESHVNETPYRGLHDVNL-PASGNASSVSAIP 547
Query: 533 EEYQTFT 553
+ T
Sbjct: 548 PQVSAQT 554
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.1 bits (57), Expect = 2.1
Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +2
Query: 218 FEGEQSTSSWDVP-GPSSLGAILDTAFTSSADNQQRNEEMECDALFAESDDEVEVLPTSD 394
F STS+ D PSS A+ +++ + D + N+E+ +A + + + TS+
Sbjct: 409 FSSYSSTSNTDKSLRPSSYSAVSESS-NFTHDVSRDNKEISLNAPKSIIVSQSDSFDTSN 467
Query: 395 IASNILNEQVPKPVSSNYVNSTISNPTFDVNLQPLSEPSSAHTP 526
+ + N+ +P+S N+ + + P+ S P
Sbjct: 468 VTQDAPNDVEKEPISGQMPNNLSVQSLKQLEVYPIRHSVSIEMP 511
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 26.6 bits (56), Expect = 2.8
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +2
Query: 305 ADNQQRNEEMECDALFAESDDEVEVLPTSDIASNILNEQVPKPVSSNYVNSTISNPTFDV 484
A + E E + +ES+DE T D + NE+ P N+T S T +
Sbjct: 675 ASETSESSEGEYETSTSESEDE----ETDDTSQEEDNEKNSTPDEDTENNNTSSISTKSI 730
Query: 485 NLQPLSEP 508
+PL+EP
Sbjct: 731 MDRPLTEP 738
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = +2
Query: 311 NQQRNEEMECDALFAESDDEVEVLPTSDIASNILNEQVPKPVSSNYVNSTISNPTFDVNL 490
N + E D F + DE T+ A+ I +P P S +++ + T ++
Sbjct: 11 NIEEKENSFFDVTFQDEPDE-----TTSTATGIAKVSIPTPKPSTPLSTLTNGSTIQQSM 65
Query: 491 QPLSEPSSAHTPV 529
EP+S P+
Sbjct: 66 TNQPEPTSQVPPI 78
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 26.2 bits (55), Expect = 3.7
Identities = 24/117 (20%), Positives = 51/117 (43%)
Frame = +2
Query: 188 TLLKRMTEKGFEGEQSTSSWDVPGPSSLGAILDTAFTSSADNQQRNEEMECDALFAESDD 367
T + +++++GF S SS P +SL A +SS + Q + E+
Sbjct: 254 TDVNKISQQGFVEISSNSSKVTPN-TSLHQSFGIASSSSNNYMQTSSELTSSTEKMNGSH 312
Query: 368 EVEVLPTSDIASNILNEQVPKPVSSNYVNSTISNPTFDVNLQPLSEPSSAHTPVPEE 538
+++ S ++ +++ + VS + S+ + P+S+PS +T +E
Sbjct: 313 PLQLSNKSLLSIHLMQSKNQGHVSMTGSDKLSSHVQSETENAPVSKPSKPNTLTEDE 369
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 323 NEEMECDALFAESDDEVEV-LPTSDIASNILNEQVPKPVSSNYVNSTISNPTFDVN 487
+E + D L AE +V LP D ++ VPK N+ + + +PTF +N
Sbjct: 781 SESTQLDQLLAEDSSTDDVSLPHLDTI-DLDGSPVPKVPDLNFSRANMDSPTFILN 835
>SPBC8D2.19 |mde3||serine/threonine protein kinase
Mde3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +2
Query: 374 EVLPTSDIASNILNEQVPKPVSSNYVNSTISNPTFDVNLQ-PLSEPSSAHT 523
+V PT+ + P SN V ISNP + NL P+S T
Sbjct: 310 DVRPTAKYCKEVFFPLPPSASKSNSVPQKISNPKVEQNLGFPISREDKKST 360
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 232 VYVFLGRSRTVVSGCYS 282
+Y F GRS +V GCYS
Sbjct: 241 LYGFSGRSNKLVDGCYS 257
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 5.0
Identities = 22/100 (22%), Positives = 41/100 (41%)
Frame = +2
Query: 200 RMTEKGFEGEQSTSSWDVPGPSSLGAILDTAFTSSADNQQRNEEMECDALFAESDDEVEV 379
R E +E E T++ + SSL +++ ++R E + + E D++VE+
Sbjct: 91 RTLESSYEDETETAN-KLSRVSSLVSVIRQTIDRKKSLERRVREEQEEKTDNEDDNDVEI 149
Query: 380 LPTSDIASNILNEQVPKPVSSNYVNSTISNPTFDVNLQPL 499
+ +N L E+ S + I F + Q L
Sbjct: 150 STQESLENNGLAEKKDDTSSLATLEDDIEGQEFSFDDQDL 189
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 194 LKRMTEKG-FEGEQSTSSWDVPGPSSLGAILDTAFTSSADNQQR 322
+K+ T+ F+ +ST+S+ +PG +SLG L+ +QR
Sbjct: 612 IKKFTQAVLFQSTKSTASFQLPGWTSLGMDLENTKLHIHQEEQR 655
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Frame = -2
Query: 377 PPLHHHSQQTK--HHTPFLHF 321
PP HH T+ HH P HF
Sbjct: 164 PPTQHHHPHTRPPHHPPHPHF 184
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -3
Query: 130 LINHFIGYGRILKHT*LFLT*IFKKNKYEISLFNFV 23
LIN I YG L H LFL F +N + FNF+
Sbjct: 343 LINTIIDYGMSLFH--LFLFAAFIRNNSLYTSFNFI 376
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 386 TSDIASNILNEQVPKPVSSNYVNSTISNPTFDVNLQPLSEPSSAHTPVPEE 538
+S+ A + N+ P SS ST + PT N Q P P+P E
Sbjct: 466 SSEEAKSTTNDSSPPKDSS----STSTQPTEQSNAQQAPSPKEEERPLPSE 512
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.4 bits (53), Expect = 6.5
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = +2
Query: 227 EQSTSSWDVPGPSSLGAILDTAFTSSADNQQRNEEMECDALFAESDDEVEVLPTSDIASN 406
E +T +V PS I + F+ + E D E + T+D+ +N
Sbjct: 453 ESTTRKSEVEPPSPSKEIKSSHFSVPEFKFEPKTEATTDKKLNVPKFEFKPTATADVQTN 512
Query: 407 ILNEQVPKP 433
L E PKP
Sbjct: 513 RLKENEPKP 521
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.0 bits (52), Expect = 8.7
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +2
Query: 263 SSLGAILDTAFTSSADNQQRNEEMECDALFAESDDEVEVLPTSDIASNILNEQVPKPVSS 442
+ +G D +F S +N +N E + + + PTS+ + +LNE VP+
Sbjct: 48 TQVGEDADNSFIS--ENTPKNT-FESTQTYENLESISKNEPTSEASKPLLNELVPE---- 100
Query: 443 NYVNSTISNPTFDVNLQPL-SEPSSAHTPVPEE 538
+ P V +PL EP PVPEE
Sbjct: 101 EPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEE 133
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Frame = +2
Query: 410 LNEQVPKPVSSNYVNSTISNPTFDVNLQP---------LSEPSSAHTPV 529
++E + ++ N +NS SN +F +QP L EP A+ PV
Sbjct: 185 IDEYITWMITENLINSEPSNSSFSYEVQPSNYTTFCRMLDEPLPANNPV 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,096
Number of Sequences: 5004
Number of extensions: 54302
Number of successful extensions: 227
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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