Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23k13
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         27   0.56 
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    25   3.0  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    24   6.8  
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac...    24   6.8  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    24   6.8  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    23   9.0  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    23   9.0  

>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 27.5 bits (58), Expect = 0.56
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 249 FIVFCSLLFVL--QIHFFTCNIHSTFYCNQFF 160
           F +F  L F+L  +IH ++CN   +  C +++
Sbjct: 78  FFLFWLLNFILFFRIHLYSCNFRMSIICEEYY 109


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 237 CSLLFVLQIHFFTCNIHSTFY 175
           C  +F   IHFF CN     Y
Sbjct: 313 CPEMFANDIHFFYCNFDDPIY 333


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 249 RVLIMNIKEICDLLSNHP 302
           RV I+ I+E C+  S+HP
Sbjct: 344 RVFILVIQEFCNTKSSHP 361


>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 295 FDNKSQISLIFMIRTLHSILLFVV 224
           F+N  ++ L+F  + +H+IL  VV
Sbjct: 99  FNNVCELDLVFKFQEIHAILAEVV 122


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 242 YFALCCLCFKYIFSLVIFILLFTVINSF 159
           Y  L C+C+ Y F    F LL  ++  F
Sbjct: 64  YGTLLCICWLYFFIWYPFALLALMVGVF 91


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 252 LFIVFCSLLFVLQIHFF 202
           L ++F SLLF++ IH F
Sbjct: 410 LRVLFFSLLFIIGIHIF 426


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 263 HDQDSS*YFALCCLCFKYIFSLVIFILLF 177
           HD   S +  L  +C  +I    I+I+LF
Sbjct: 582 HDLSKSSFSGLIIVCLIWILVAAIYIILF 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,165,663
Number of Sequences: 5004
Number of extensions: 18808
Number of successful extensions: 45
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)