Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23k11
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    28   1.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   1.8  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   4.2  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    26   5.6  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    26   5.6  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    25   7.4  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   9.7  

>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 363 PTAQVQTHPRFHKLLVFQSKQARTC 289
           P +  +  P +HKLL+F  K AR C
Sbjct: 231 PVSDPEYFPVYHKLLLFWQKPARKC 255


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -3

Query: 644 FPNSTRSSTASIFGAHSPG--GVFRACIIEFLTYSFNIKLSMDPDCSVCCTDMISRTFVK 471
           FP    SS  +I  +  P   G F+  I +++TY  +  L+++   S   T+ +  +   
Sbjct: 585 FPVPLVSSQIAIISSLGPSYSGCFQGPINDYMTYKASTALTLEIQDSKSNTEDLLHSIQA 644

Query: 470 IIQTLIAFLMC 438
             ++ IAF+ C
Sbjct: 645 FSRSPIAFMSC 655


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 369 VSPTAQVQTHPRFHKLLVFQ-SKQARTCVYFLFLVYLKVSRLPN 241
           V PTA    H  F K+L +  S ++R CV+ + +  +K S + N
Sbjct: 661 VDPTALAPGH-HFGKVLAYDASNESRRCVFEIPVTVMKPSSISN 703


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 171 DFLFKPIIMVTGFGPFANHPVNASWE--AVKLLDKQEIENKHRCELVLIE 314
           D++F  II    F          SW+  A+K+LDK+ I  +++ + V IE
Sbjct: 53  DYVFGDIIGDGSFSKVRRATDKKSWKEYAIKVLDKKYIVKENKVKYVNIE 102


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 270 QEIENKHRCELVLIEIPVTYENVDEFVPALWETHTPKLMI 389
           +E      C L L+  P+ Y  ++EFV  L E      ++
Sbjct: 413 EEASRVRHCALSLVGEPIFYPYINEFVSMLHEREISSFLV 452


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 612 HLWSSQPWWS 583
           H+WS  PWW+
Sbjct: 108 HIWSGLPWWA 117


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 662 AVVYS*FP-NSTRSSTASIFGAHSPGGVFRACIIEFLTYSFNIKLSMDPDCSVCCTDMI 489
           AVV S  P N+ +    +     SP G +R  ++     S  +   +  D S  CTD+I
Sbjct: 91  AVVNSFLPFNNPKDDYKTRITLRSPSGSYRGSVVCLFKRSKFLPEELPADKSQICTDII 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,046
Number of Sequences: 5004
Number of extensions: 55165
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)