Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23k10
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    29   0.65 
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    27   2.0  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    27   2.0  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   4.6  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   4.6  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   6.1  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   8.1  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    25   8.1  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   8.1  

>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 541 SGFHDCHRIIFEEVN--NIDHSYSIVFIRIFKHW 446
           S F D H   FE++     DH ++ V ++ FK W
Sbjct: 212 SKFPDAHSCFFEQIAPATFDHPFANVMVKHFKEW 245


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
 Frame = +2

Query: 371 ALPAVVPH---WVHYDKRCLNFTAFFKQPVFENPDENYRVRVVNIVYFLEDDS 520
           + P VVP     VH+D    N +  +K PV E  D   R    N  Y  +  S
Sbjct: 305 SFPKVVPKNEISVHHDSSSSNVSPIYKNPVAEQSDTPTRSLPKNYAYVAKSTS 357


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = -3

Query: 508 EEVNNIDHSYSIVFIRIFKHWLFEKCREIKAAFVIMDPVRHDCRQRWLFHPSIGQRWVIV 329
           +E N I H  ++   R F+ W FEK    KAA + +   +    ++W+   S+  R +++
Sbjct: 53  DEENKIVHLNNLKEDR-FQLW-FEKYIPQKAADLAVHKSKISAIKQWMLTDSLESRLLLI 110

Query: 328 DRIIGQGKRIAVNI 287
               G GK  AV +
Sbjct: 111 CGPSGCGKSTAVQV 124


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 390 RTGSIMTNAALISRHFSNSQCLKIRMKTIEYEWSILFTSS 509
           RT S +   +L+       QC+   + TIEYE +I+F SS
Sbjct: 226 RTPSSLAIQSLVIPPIYKVQCMIHLLCTIEYEKAIVFFSS 265


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 73  NSETMYTLSWKRMFRCW-VGSC*Y 5
           NSET+ T SW    R W +G C Y
Sbjct: 108 NSETIITGSWDSTARVWALGQCKY 131


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 172 FDIFGSNQDAVSFAKLFKIL 231
           + IFGSNQ  +   K FKI+
Sbjct: 155 YKIFGSNQRCIDLLKTFKIV 174


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 443 QPVFENPDENYRVRVVNIVYFLEDD 517
           +P+ E P+ENY ++    VY+ E++
Sbjct: 81  KPLIEEPEENYGIKDRIPVYYEEEE 105


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -1

Query: 228 YLKELRK*YCVLVGSENVKPGSLGRPHAMAIRLVVIVYEMYYQKYLLKIIKQTAKQ 61
           +LK L+   C +   EN +  S G    ++  L+ I+ E+ Y +YL++  K+T ++
Sbjct: 479 FLKSLKSFLCSISKLEN-RYLSNGHSATLSDLLLGILSEIKYYEYLVRKNKETVEE 533


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 434 FFKQPVFENPDENYRVRVVNIVYFLEDDSMTV 529
           FF+Q + +N D+NY+  V  ++  L++D + V
Sbjct: 33  FFRQGIVQNLDDNYKTFVWPLI--LKEDGIEV 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,441
Number of Sequences: 5004
Number of extensions: 53093
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)