Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23k08
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   260   9e-71
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    27   1.8  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    27   2.3  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.3  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   5.3  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    25   7.1  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    25   7.1  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   9.3  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  260 bits (638), Expect = 9e-71
 Identities = 119/164 (72%), Positives = 141/164 (85%), Gaps = 1/164 (0%)
 Frame = +2

Query: 158 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 337
           YK+AD  LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6   YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65

Query: 338 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGKP 514
           L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L  FP GKP
Sbjct: 66  LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125

Query: 515 LNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMF 646
           LNMILDDGGDLT LVH ++P+LL D++GI+EETTTGVHNLYKMF
Sbjct: 126 LNMILDDGGDLTALVHERHPELLVDIRGISEETTTGVHNLYKMF 169


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +2

Query: 56  PIYFRYFNKNNLKRKQQVNLP*VYQTLYYKMKPPYKIADEKL--AEWGRKEIMLAEKEMP 229
           P YF +  KN     +   LP  YQ +  +  PPY     KL     G KE  +A  + P
Sbjct: 8   PYYFTH-EKNLNNASKYSELPIAYQEIPLQSLPPYPKVASKLKGVVAGGKENNIASFQKP 66

Query: 230 GLMACRRKYAPA 265
              A  R Y P+
Sbjct: 67  SSKA-TRPYIPS 77


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -1

Query: 289 YSGTFEYFSWSIFPTTCHKAWHFFLC*HNFFSAPFSQFLVSDFVRRLHFVVQSLIY 122
           Y   +  ++W  F  T +K  H+FL  H +   P + F+         F V S+++
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVY--VPLNSFMSKSLSTFFTFFVSSVLH 409


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 594 FTSFKRSGYLVWTKFVKSPPSSKIILRGF 508
           +  F++ G L + K VK P + + + RGF
Sbjct: 294 YNHFRQFGPLAYAKLVKDPATDRSLGRGF 322


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +1

Query: 199 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 378
           R+Y    R ++PY  S    SS        S  ++  STNS      N   SR T + + 
Sbjct: 90  RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149

Query: 379 H 381
           H
Sbjct: 150 H 150


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 542 DLTNLVHTKYPDLLKDVKG 598
           D  N + TK+P ++KDV+G
Sbjct: 376 DRLNKLQTKFPHVMKDVRG 394


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 249 RRHAIRPGISFSANIISFRPHSANFSS 169
           R  A++PG +   +I  +RP   NF+S
Sbjct: 31  RERAVKPGYTAPEDIKRYRPGRGNFAS 57


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 29  RERVLQYQVPIYFRYFNKNNLKRKQQVNL 115
           +  +L+  V  YFRY  + +LK +Q++ L
Sbjct: 668 QNELLRRSVDTYFRYIFQTDLKLEQRIKL 696


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,422
Number of Sequences: 5004
Number of extensions: 57762
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)