Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23k06
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 280 1e-76
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 279 2e-76
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 29 0.83
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 2.5
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 4.4
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.7
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 25 7.7
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 25 7.7
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 280 bits (687), Expect = 1e-76
Identities = 137/198 (69%), Positives = 156/198 (78%), Gaps = 1/198 (0%)
Frame = +3
Query: 87 KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 263
K+GINGFGRIGR+VLR +I G QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE +
Sbjct: 5 KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64
Query: 264 GFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAP 443
G LV++G+ I V +ERDP I W +GAEYV+ESTGVFTT + ASAHL+GGAK+VIISAP
Sbjct: 65 GKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAP 124
Query: 444 SADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXX 623
S DAPMFVVGVNLE ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM
Sbjct: 125 SKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTAT 184
Query: 624 XXXXDGPSGKLWRDGRGA 677
DGPS K WR GRGA
Sbjct: 185 QKTVDGPSKKDWRGGRGA 202
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 279 bits (685), Expect = 2e-76
Identities = 136/198 (68%), Positives = 156/198 (78%), Gaps = 1/198 (0%)
Frame = +3
Query: 87 KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 263
K+GINGFGRIGR+VLR A + K QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++D
Sbjct: 5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64
Query: 264 GFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAP 443
G LV++GN I V +ERDP I W +GA+YV+ESTGVFTT + ASAHL+GGAK+VIISAP
Sbjct: 65 GKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAP 124
Query: 444 SADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXX 623
S DAPM+VVGVN E ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM
Sbjct: 125 SKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTAT 184
Query: 624 XXXXDGPSGKLWRDGRGA 677
DGPS K WR GRGA
Sbjct: 185 QKTVDGPSKKDWRGGRGA 202
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 28.7 bits (61), Expect = 0.83
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -1
Query: 452 ISTGS*YNNFFSTSLQVSRCFICSGKDTSRLYNIFSPSFSPRNGLRVPF*E-NGNFVTIN 276
+ +G +N +S + C +C G + ++ +P F R +R+P NGN TI
Sbjct: 153 VCSGQGFNPKYSADKAIESCPVCGGSGFRVIEHMIAPGF--RQQMRMPCNACNGNGRTIK 210
Query: 275 NK 270
+K
Sbjct: 211 HK 212
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 293 NFVTINNKESILNLNTALKTAMGGIILEKINHIVK---TDERVIYSDHLSPLFNR 138
+F + N+ESIL+L L + + E I++IV+ +D R HLS L +
Sbjct: 338 SFKKLQNEESILHLLNILHSIFEYTVPEAIDNIVQSKTSDARTSEIQHLSVLLQK 392
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = +2
Query: 47 LFNKFSITCREHVKNWNQWIWPHWPFGAPCFY*KGGSSGRY 169
LF K S T RE K W GA FY G +GRY
Sbjct: 180 LFKKTS-TLREAKKRLKHRFWTELYQGAKLFYLSGVLNGRY 219
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 338 FSPRNGLRVPF*ENGNFVTINNKESILNLNT 246
FSP V E+ + +++N +S+ NLN+
Sbjct: 67 FSPSKATTVSLKESASLTSLSNNKSVSNLNS 97
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 102 GFGRIGRLVLRASIEKGAQVVAINDPFIGLDYMVYLF 212
GF RI +R EKG QVV D I + + +L+
Sbjct: 298 GFVRIESQKIRQHAEKGEQVVFTGDRVIQTNVVPFLY 334
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 50 FNKFSITCREHVKNWNQWIWP 112
FN SI R V W QWI+P
Sbjct: 244 FNLHSICDRNTVHMWLQWIFP 264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,482
Number of Sequences: 5004
Number of extensions: 63637
Number of successful extensions: 203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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