Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23k02
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    29   0.61 
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    29   0.80 
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    27   3.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.2  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   3.2  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   3.2  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    26   5.6  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   5.6  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   7.5  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    25   7.5  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   7.5  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    25   7.5  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   9.9  

>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 10/34 (29%), Positives = 24/34 (70%)
 Frame = +2

Query: 290 DIAIQQDMNLSLDPRKQLMRKKLEDVEFESDADD 391
           D++++QD  +  + +K  ++K++ ++E +S ADD
Sbjct: 330 DLSVEQDSAIFKEQKKMKIQKRMRELETQSFADD 363


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 323 LDPRKQLMRKKLEDVEFESDADDKNANSLNVINNTTKFINGIESALTFEK 472
           +D     ++K   +VEF      ++ N+L   N  T+F+N +ES   F +
Sbjct: 608 IDAENLRIKKATTEVEFTEVTPAEDQNALASSNIETEFLNALESVSEFNE 657


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 167 PAKSLRAGSILVHINCFKLSNLELMAEKENSVCIVFQK 280
           P K  R G+     NC    +LEL  EK  ++C  FQK
Sbjct: 40  PCKFFRQGTCTSGKNCIFSHDLELATEK--TICKYFQK 75


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 377  SDADDKNANSLNVINNTTKFINGIESAL 460
            SD DD ++NS N  N+TT+  N  +  L
Sbjct: 981  SDIDDNDSNSSNTSNHTTENANAQQRKL 1008


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +2

Query: 332 RKQLMRKKLEDVEFESDADDKNANSLNVINNTTKFINGIESALTFEKDFN 481
           RKQ+ R KLE+  F+   DD    +       TK    +      EKD N
Sbjct: 834 RKQIERTKLEETSFKKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKDIN 883


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/45 (20%), Positives = 26/45 (57%)
 Frame = +2

Query: 386  DDKNANSLNVINNTTKFINGIESALTFEKDFNSLKKTYEKIMKSI 520
            ++K ++S  +       +   +SAL+F+KD+  ++   ++++ S+
Sbjct: 1024 EEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSL 1068



 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 320  SLDPRKQLMRKKLEDVEFESDADDKNANSLN 412
            +L+  KQ +  KL++   E+D   +  NSLN
Sbjct: 1363 ALEKEKQELETKLQETAKETDTFKQQVNSLN 1393


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -2

Query: 161 YYKNQLIQKVNIIMQENVLTLTLPQNIKTSIISILNYLYY 42
           Y+ NQL++ + + M  N++TL     +  +I+++L Y Y+
Sbjct: 32  YWWNQLLKVIPMSMAPNLITLIGLGFVVINILTMLVYKYH 71


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 451 FNAIYKFCRIIDHIQ*ICIFVICIAFKFHIFEFL 350
           FN I   CR+I  I  I +  I   F F++  F+
Sbjct: 276 FNIIRLACRVIADIPQITLIFISFLFSFYVLIFI 309


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +2

Query: 305 QDMNLSLDPRKQLMRKKLEDVEFESDADDKNANSLNVINNTTKFINGIESA 457
           ++ +  LD + Q+    ++ +       D + NS++ + N T+  +G ESA
Sbjct: 614 ENSSAPLDLQSQICMAMVDQLFHSKVVLDPSFNSIDEVTNVTRKFSGFESA 664


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 180 RLFAGNLLQKST--DSKSKYYHARKCAN 103
           R+F  NL +K +  D+KS Y+H R+  N
Sbjct: 281 RMFYSNLYKKLSHRDAKSIYHHVRRAYN 308


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 314 NLSLDPRKQLMRKKLEDVEFESDADDKN 397
           +L++D   ++    LED+ F++DADD N
Sbjct: 98  DLNIDVESEVF--DLEDINFQNDADDIN 123


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 395 NANSLNVINNTTKFINGIESALTFE 469
           N  S+NV+NN  KF +  +  +TFE
Sbjct: 5   NILSVNVLNNPAKFSDPYKFEITFE 29


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 95  LPQNIKTSIISILNYLYYSMTT 30
           LPQN++  +  I+ YL YS+TT
Sbjct: 317 LPQNLQPFVFMIIQYL-YSITT 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,109
Number of Sequences: 5004
Number of extensions: 43443
Number of successful extensions: 155
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)