Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23j23
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    28   1.1  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   1.1  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.0  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.0  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   3.5  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   4.6  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   4.6  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    25   6.1  

>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 297 CALNFFPETQKLQSLHS*DTNSFLMRSYKLARLL 196
           C + +FP+     S HS D  +F  R Y L R L
Sbjct: 21  CFVKYFPKCSVQSSFHSYDELAFSRRLYNLPRTL 54


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 19/102 (18%)
 Frame = +2

Query: 191 SCNNRASLYDRIKKLLVSYE-----WSDCNFCVSGKKFKAHKLILGISSPVFEAMLY--- 346
           S N    L++    +L SYE     +SD         F +HK IL   S     +L    
Sbjct: 593 SSNEMQLLFEGSIPILTSYENYKQSFSDVTIYCGTSMFHSHKFILCARSSFLRKLLLQKK 652

Query: 347 -GPLSN----------NNDIHIPDIEPEIFQLILNYIYTDNV 439
              +SN          ++ I + DI P    ++L+Y+YTD +
Sbjct: 653 KSSVSNIIYIEEITQSHSTIRVEDIPPLAVAILLHYLYTDTL 694


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 266 FCVSGKKFKAHKLILGISSPVFEAMLYGPLS-NNNDIHIPD--IEPEIFQLILNYIYTDN 436
           F  SG  F   K+  GI  P+FE +  G     NN ++I    +EP+     L Y+++D 
Sbjct: 306 FLFSGTVFMRVKV--GI--PLFERLKVGTNKVKNNSVNIAQSFLEPQTRSTFLRYLFSDE 361

Query: 437 VDI 445
           V +
Sbjct: 362 VSV 364


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 395 EIFQLILNYIYTDNVDITSIEQAFDLLYASRKYLLEHLTKTCIEYIKENVTIDN 556
           +IFQ  LN+I T N ++ S+    D     + Y+L+   +   + +KEN T+ N
Sbjct: 59  DIFQDFLNFIITKNQEMFSM----DCNSICKSYVLKVAEEKIEKLLKENGTLKN 108


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 419  YIYTDNVDITSIEQAFDLLYASRKY 493
            Y+   +VD+T I   ++LLY S  Y
Sbjct: 1449 YLQRQHVDVTDIPMYYELLYPSTDY 1473


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +2

Query: 377  IPDIEPEIFQLILNYIYTDNVDITSIEQAFDLLYASRKYLLEHLTKTCIEYIKENV 544
            +PD+       +L+ + T++  +T+    +   YA ++YL E+ T T   YIK ++
Sbjct: 1032 MPDVNYWYADTMLHAVNTEDF-VTTDGDIWSATYAIKRYLGENPTDTFAYYIKASL 1086


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 176  LKNENSCNNRASLYDRIKKLLVSYEWSDCNFC 271
            +K EN CNN + L++ I++  +S      N C
Sbjct: 1048 IKQENLCNNGSLLFEAIEQNSLSKVMIPLNIC 1079


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 351 GPYNIASKTGLLIPSISLCALNFFPETQKLQS 256
           GP ++  + G+L+P+  +CA +   +T  + S
Sbjct: 195 GPVDVEKQCGVLLPNGQMCARSLTCKTHSMSS 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,240
Number of Sequences: 5004
Number of extensions: 48102
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)