Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23j13
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    30   0.36 
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    27   2.5  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    26   4.4  
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ...    26   4.4  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   4.4  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.4  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   7.7  
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce...    25   7.7  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +2

Query: 62  ILGNKLRSLPLITEGVESGFFICCK*ASV*QCDSNVVRENKHTSKSLAIQVHRVAAKAAK 241
           ++G  +    LI  G + GF +CC   +  + D  +  E K  S   A  +    +K  K
Sbjct: 11  LIGLAVMGQNLILNGADKGFTVCCYNRTTSRVDEFLANEAKGKSIVGAHSLEEFVSKLKK 70

Query: 242 PLSC 253
           P  C
Sbjct: 71  PRVC 74


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 354 IMKDTLNCLIARTLMMSPSGSEHY 283
           +M   L CL+A+ L   P+  EHY
Sbjct: 279 LMPSILTCLVAKRLGSDPNNHEHY 302


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 24  QINYAAKANMFFLFWEINYVRCH*LRKGWSLVF 122
           Q+N++ +A    L  EI   RCH L K W  +F
Sbjct: 183 QVNFSFQARQ--LNTEIQLRRCHSLEKTWKFLF 213


>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 506 VLCKYIDVRLPLAVTKPSSSLKRSQSRHTAISFRPRIVDHVIPNKQH 366
           VL  Y D+R P  +TK   +L+     +T  S   R+VD VI +  H
Sbjct: 90  VLPIYGDIRDPNTLTKLFEALRLLHEPNTNDSIDCRVVDAVISDMLH 136


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 554 KTNRLDKRNRFTCRTLVLCKYIDVRLPLAVTKPSSSLKRSQSRHTA 417
           K+N L     F    +V+  Y D+R  L  T+  S   R + RH +
Sbjct: 366 KSNGLKSAKIFLDCDIVVTSYSDLRFELLYTESHSRTLRHEKRHVS 411


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -3

Query: 490 LMFDSHSQSQNRVVH*KDRNHGTQQFHFAPASSITSFPTNNTHLTNY 350
           L F+ +S   +     +D N  T  F    +SS+TS PT ++H++N+
Sbjct: 82  LSFNMNSSEISNTHWARDFNILTSNF---ASSSVTSAPTQSSHISNF 125


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 5    KTFLDLTNQLRSEGEHVLFILGNKL 79
            KTFL L ++++  G H++    NK+
Sbjct: 1808 KTFLQLLSEIKRLGAHIIHASANKI 1832


>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 425 AVIAIFSMNYSVL*LRVGVEHQCIYIAPTF 514
           A +AI+ +N+S    RVG+  + +Y+ P F
Sbjct: 67  AGMAIYFLNFSTWTSRVGIYLEDLYVRPQF 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,923
Number of Sequences: 5004
Number of extensions: 59095
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)