Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23j13
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477...    31   0.84 
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075...    29   4.5  

>07_03_1291 + 25545749-25546262,25546989-25547669,25547693-25547751,
            25549152-25549242,25549330-25549743,25550191-25550243,
            25550947-25551177,25551492-25551708,25551790-25551890,
            25552446-25552532,25553536-25553676,25553839-25553961,
            25554070-25554522,25554931-25555308,25555410-25556060,
            25556264-25556368,25556482-25556707,25557204-25557241
          Length = 1520

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 352  YEGHIELSYCSNVDDVTIWFRTLP 281
            Y+    +S+CS +DD+ I+F+T+P
Sbjct: 1448 YKSSSSVSFCSYLDDIVIYFQTMP 1471


>04_04_0491 -
           25605560-25605684,25605826-25605928,25606026-25607592,
           25608694-25610198
          Length = 1099

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = -1

Query: 399 HRRSRHSQQTTLT*LIMKDTLNCLIARTLMMSPSGSEHYRTSLL*VFEGHESGLAALAAT 220
           H R R  +Q     L++ D  NC    +++     +   +TSL+      E+  +     
Sbjct: 182 HGRERDKKQVIK--LLLSDEYNCQGVYSVVPIVGAAGVGKTSLVQHIYNDEALRSKFDMK 239

Query: 219 RWTWIASDFDVCLFSR 172
            W W+  +FDV   +R
Sbjct: 240 MWVWVCQEFDVLKLTR 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,320,788
Number of Sequences: 37544
Number of extensions: 353139
Number of successful extensions: 836
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)