Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23j12
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 232 2e-62
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 222 3e-59
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 124 1e-29
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 109 4e-25
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 28 0.84
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 4.5
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 7.8
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 232 bits (568), Expect = 2e-62
Identities = 102/157 (64%), Positives = 122/157 (77%)
Frame = +2
Query: 98 MRECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGK 277
MRE ISIH GQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 278 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 457
+VPR++++DLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 458 RVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERL 568
++R++AD C+GLQGFL+ LL+ERL
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERL 157
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 222 bits (543), Expect = 3e-59
Identities = 99/161 (61%), Positives = 122/161 (75%), Gaps = 4/161 (2%)
Frame = +2
Query: 98 MRECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGD----DSFNTFFSET 265
MRE IS+H GQAGVQIGNACWELYCLEHGI PDG + V + D F TFFSET
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 266 GAGKHVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 445
G GK VPR++++DLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 446 LVLDRVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERL 568
VL+R+R++AD C+GLQGFL+ LL+ERL
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERL 161
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 124 bits (298), Expect = 1e-29
Identities = 60/135 (44%), Positives = 80/135 (59%)
Frame = +2
Query: 98 MRECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGK 277
MRE + I AGQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHG--TSEAQHERLNVYFNEAAGGK 58
Query: 278 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 457
+VPRAV +DLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118
Query: 458 RVRKLADQCTGLQGF 502
VR+ A+ C LQGF
Sbjct: 119 VVRREAEACDALQGF 133
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 109 bits (261), Expect = 4e-25
Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Frame = +2
Query: 101 RECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKH 280
RE I++ AGQ G QIG+ W+ CLEHGI PDG + S T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 281 VPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVL 454
+PRA+ IDLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 455 DRVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERL 568
D + + AD L+GF + L+ERL
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERL 157
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 28.3 bits (60), Expect = 0.84
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 567 RRSIRSDAKPDPVPPPNEWKIRKP 496
RR ++++ PD V PP W +R P
Sbjct: 241 RRFLKTNYSPDDVAPPPNWVLRYP 264
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -3
Query: 189 WMPCSRQYSSQHALPICTPAWPAWIDMHS 103
W P H +PI TPA+P+ H+
Sbjct: 286 WNPKLYPSDKAHRMPIITPAYPSMCATHN 314
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 7.8
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -1
Query: 182 HVRDNTAPNTRCRFAHQPG 126
++R+ PN C + H+PG
Sbjct: 208 YLRNQQCPNPSCMYLHEPG 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,708
Number of Sequences: 5004
Number of extensions: 46226
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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