Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23j11
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964...    28   1.8  
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166...    26   5.6  
02_05_0292 + 27581862-27581913,27582395-27582615,27582691-275830...    26   7.4  
11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558     25   9.7  

>01_07_0383 -
           43195095-43195322,43195408-43195638,43196134-43196454,
           43196512-43196589,43196664-43197727,43197813-43198503,
           43198743-43199541,43200010-43200158,43200159-43200286,
           43200389-43200494,43200835-43200843,43201332-43201821,
           43201896-43202554,43203759-43203851,43204044-43204196,
           43205092-43205194,43205376-43205467,43206229-43206306,
           43206987-43207049,43207339-43207512
          Length = 1902

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 69  YCYIRSVLFLLFLHYLK*STYRT*YQKYSMFVKF 170
           YC I  V+F  F H+L+   Y +    Y + V+F
Sbjct: 383 YCNIHKVVFSRFWHFLQNGCYGSKQASYPLLVQF 416


>11_05_0069 -
           18814789-18815326,18815742-18816001,18816077-18816631,
           18816907-18817062
          Length = 502

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 297 FLIQTVHPLSSYERIASFNDLTIVSF*LCSADF 199
           F   ++ PLSS  + ASFN    +SF + +A F
Sbjct: 377 FYSYSIGPLSSESKAASFNTRGSLSFDMATASF 409


>02_05_0292 +
           27581862-27581913,27582395-27582615,27582691-27583087,
           27583645-27583730,27584229-27584292,27584395-27584507,
           27584998-27585036,27585037-27585177
          Length = 370

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 37  DYVYNLCYLNYTVIYAQFYFYYFYTI 114
           ++ Y L  LNY+ I  QF F   YT+
Sbjct: 295 NFSYTLMVLNYSCIGFQFVFTMLYTL 320


>11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558
          Length = 852

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 63  KLYCYIRSVLFLLFLH 110
           KL CY+R  +FL+ LH
Sbjct: 282 KLRCYLRGKIFLIVLH 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,041,952
Number of Sequences: 37544
Number of extensions: 91588
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)