Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23j11
         (318 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical ...    27   2.2  
Z82057-3|CAB04860.2|  303|Caenorhabditis elegans Hypothetical pr...    26   6.8  
Z49071-8|CAA88878.2|  322|Caenorhabditis elegans Hypothetical pr...    25   8.9  
AL031630-18|CAA21002.1|  278|Caenorhabditis elegans Hypothetical...    25   8.9  
AF003386-4|AAO38631.1|  452|Caenorhabditis elegans Hypothetical ...    25   8.9  
AF003386-3|AAO38630.1|  499|Caenorhabditis elegans Hypothetical ...    25   8.9  

>AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical
           protein Y105C5B.1 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 40  YVYNLCYLNYTVIYAQFYFYYF 105
           +VYNL +L +T I   FY++ F
Sbjct: 194 FVYNLVFLFFTFITGAFYYHLF 215


>Z82057-3|CAB04860.2|  303|Caenorhabditis elegans Hypothetical
           protein T26H8.2 protein.
          Length = 303

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 40  YVYNLCYLNYTVIYAQFYF 96
           YVYN C L Y  +++ F+F
Sbjct: 142 YVYNDCKLFYNEVFSAFFF 160


>Z49071-8|CAA88878.2|  322|Caenorhabditis elegans Hypothetical
           protein T22C8.6 protein.
          Length = 322

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 64  NYTVIYAQFYFYYFYTI*NDLHTEHNIKNILCL*NSD 174
           NY    A  +F YF ++   +  EH IK + C  N D
Sbjct: 3   NYNYFTASLFFAYFSSVYAGMDREHLIK-LACARNPD 38


>AL031630-18|CAA21002.1|  278|Caenorhabditis elegans Hypothetical
           protein Y38H6C.21 protein.
          Length = 278

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 10  KQLDEERI*DYVYNLCYLNYTVIYAQFYFYYF 105
           K+L +E I   +YN      T+I   FYF+ +
Sbjct: 147 KKLQQETILLEIYNCILFAMTIITGSFYFHIY 178


>AF003386-4|AAO38631.1|  452|Caenorhabditis elegans Hypothetical
           protein F59E12.6b protein.
          Length = 452

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 217 IVQCRFSLTVMSRINLNFTNIEYF*YYVRY 128
           IVQ    +  +  + LNFT++EY  Y ++Y
Sbjct: 47  IVQLLIRVPQLESVLLNFTSMEYLNYALQY 76


>AF003386-3|AAO38630.1|  499|Caenorhabditis elegans Hypothetical
           protein F59E12.6a protein.
          Length = 499

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 217 IVQCRFSLTVMSRINLNFTNIEYF*YYVRY 128
           IVQ    +  +  + LNFT++EY  Y ++Y
Sbjct: 94  IVQLLIRVPQLESVLLNFTSMEYLNYALQY 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,071,597
Number of Sequences: 27780
Number of extensions: 107427
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)