Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23j08
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 29 0.58
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces... 28 1.0
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 27 1.3
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 26 3.1
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 26 4.1
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 4.1
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 25 7.2
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 25 7.2
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 7.2
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 28.7 bits (61), Expect = 0.58
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Frame = +3
Query: 381 LTKKSLPCAH-------RNLSFIERNQRCPSPTSSVLSSKRSYQPIPYS 506
+T K LPC H RN ++ER Q CP SV+ ++ S IP S
Sbjct: 321 MTPKRLPCGHILHFHCLRN--WLERQQTCPICRRSVIGNQSSPTGIPAS 367
>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 27.9 bits (59), Expect = 1.0
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +3
Query: 288 FLLKQDNGMTMYSCQKVEMDDQGKILLDESSLTKKSLPCAHRNLSF---IERNQRCPSPT 458
FL K D +T Y C+K + K L + + +L C H + I+ C S +
Sbjct: 195 FLWKVDKLLTAYICRKNALLQINKSLTIDGTNISANLSCTHLVIQIPKVIQATLVCSSES 254
Query: 459 SSVLSSKRSYQ 491
+ V+ S R YQ
Sbjct: 255 TRVVKS-RIYQ 264
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 447 PSPTSSVLSSKRSYQPIPYSHYQNEVPK 530
PSP SS + +KR + P P+S +Q P+
Sbjct: 1244 PSPPSSSVWNKREHHPKPFSLHQVPPPE 1271
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 288 FLLKQDNGMTMYSCQKVEMDDQGKILLDESSLTKKSLP 401
FL + NG ++Y C+ +++++ K+L +S L P
Sbjct: 611 FLRFRANGTSIYICENIDLNEPFKVLNVDSELIPAVYP 648
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 51 VEFVKLREELCRKWLAE 101
+E+VKLRE LC K L E
Sbjct: 44 IEYVKLRENLCTKVLNE 60
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 4.1
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -1
Query: 402 RVNFFLLNYFHPKVSCLDRPFQLFDKNTLSFHYPASKETTCPEV*E*HKTKS 247
R N L NY VS LD F+ FD + + Y + C E E K +S
Sbjct: 284 RKNLSLQNYVGFFVSVLDALFECFDVPVVQYMYQENIIGICNEHFEHFKNES 335
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 297 KQDNGMTMYSCQKVEMDDQGKILLDESSLTKKSLPCAHRNL 419
KQDN + +YS ++ KI L + ++S+ C R +
Sbjct: 4 KQDNEVELYSIDLKNRNESAKIKLAYAKALEESILCETRKI 44
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 420 SFIERNQRCPSPTSSVLSSKRSYQPIPYSHYQNEVPKYD 536
S+ E +Q S V S+ +SY+P+P S +P++D
Sbjct: 200 SWSESDQEKKSFIDLVRSTAKSYKPLPPSSTGVSLPEHD 238
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 141 LSKNLYHLSCGDEDHRDSIGVIEVSTRMSFLGKEI 245
L++ + GDE+ D++ +S +LGKE+
Sbjct: 300 LARQQIPMDMGDEELNDALNNTHLSDHFHYLGKEL 334
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 516 FDSVNTESADMIS*MTERLMLDSDTFDFFQ 427
F S NTE D +S + L LD+D+ + FQ
Sbjct: 284 FGSENTEEIDTVSKTSGVLELDNDSTNNFQ 313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,630
Number of Sequences: 5004
Number of extensions: 47652
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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