Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23j08
         (537 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537991-1|CAD97950.1|  626|Homo sapiens hypothetical protein pr...    30   4.5  
BC146792-1|AAI46793.1| 2624|Homo sapiens B double prime 1, subun...    29   7.9  
AK057871-1|BAB71602.1|  635|Homo sapiens protein ( Homo sapiens ...    29   7.9  
AJ279120-1|CAC21448.1| 2187|Homo sapiens TFNR protein.                 29   7.9  
AJ238520-1|CAC04245.1| 2254|Homo sapiens putative transcription ...    29   7.9  
AF298152-1|AAG30221.1| 1372|Homo sapiens RNA polymerase III tran...    29   7.9  
AF298151-1|AAG30220.1| 1388|Homo sapiens RNA polymerase III tran...    29   7.9  
AF176695-1|AAG09268.1|  846|Homo sapiens transcription factor II...    29   7.9  
AB051476-1|BAB21780.3| 2627|Homo sapiens KIAA1689 protein protein.     29   7.9  

>BX537991-1|CAD97950.1|  626|Homo sapiens hypothetical protein
           protein.
          Length = 626

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 6   TSCVTKIGQACMDLTVEFVKLREELCRKWLAEQPDDNI 119
           T+C   IGQ  ++  ++ ++  E+LCR+ L+E  D N+
Sbjct: 188 TACAL-IGQGQLNQAMKILQKAEDLCRRSLSEDTDQNV 224


>BC146792-1|AAI46793.1| 2624|Homo sapiens B double prime 1, subunit
           of RNA polymerase III transcription initiation factor
           protein.
          Length = 2624

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
 Frame = +3

Query: 261 ATPKPQGTSFLLKQDNGMTMYSCQKVEMDDQGKILLDESSLTKKSL----PC-AHRNLSF 425
           +TP  +      + D+G  +    +V++ + G I+LDE SLT + L    PC    N   
Sbjct: 225 STPNAEDNEMEEETDDGPLLVP--RVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPI 282

Query: 426 IERNQRCPSPTSSVLSSKRSYQPIPYSHYQNEV 524
            ER       T++  S +++Y   P+S+ + ++
Sbjct: 283 FERGS-----TTTYSSFRKNYYSKPWSNKETDM 310


>AK057871-1|BAB71602.1|  635|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25142 fis, clone CBR07252, highly similar to
           Homo sapiens mRNA for putative transcription factor-like
           nuclear ).
          Length = 635

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
 Frame = +3

Query: 261 ATPKPQGTSFLLKQDNGMTMYSCQKVEMDDQGKILLDESSLTKKSL----PC-AHRNLSF 425
           +TP  +      + D+G  +    +V++ + G I+LDE SLT + L    PC    N   
Sbjct: 205 STPNAEDNEMEEETDDGPLLVP--RVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPI 262

Query: 426 IERNQRCPSPTSSVLSSKRSYQPIPYSHYQNEV 524
            ER       T++  S +++Y   P+S+ + ++
Sbjct: 263 FERGS-----TTTYSSFRKNYYSKPWSNKETDM 290


>AJ279120-1|CAC21448.1| 2187|Homo sapiens TFNR protein.
          Length = 2187

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
 Frame = +3

Query: 261 ATPKPQGTSFLLKQDNGMTMYSCQKVEMDDQGKILLDESSLTKKSL----PC-AHRNLSF 425
           +TP  +      + D+G  +    +V++ + G I+LDE SLT + L    PC    N   
Sbjct: 225 STPNAEDNEMEEETDDGPLLVP--RVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPI 282

Query: 426 IERNQRCPSPTSSVLSSKRSYQPIPYSHYQNEV 524
            ER       T++  S +++Y   P+S+ + ++
Sbjct: 283 FERGS-----TTTYSSFRKNYYSKPWSNKETDM 310


>AJ238520-1|CAC04245.1| 2254|Homo sapiens putative transcription
           factor-like nuclear regulator protein.
          Length = 2254

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
 Frame = +3

Query: 261 ATPKPQGTSFLLKQDNGMTMYSCQKVEMDDQGKILLDESSLTKKSL----PC-AHRNLSF 425
           +TP  +      + D+G  +    +V++ + G I+LDE SLT + L    PC    N   
Sbjct: 225 STPNAEDNEMEEETDDGPLLVP--RVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPI 282

Query: 426 IERNQRCPSPTSSVLSSKRSYQPIPYSHYQNEV 524
            ER       T++  S +++Y   P+S+ + ++
Sbjct: 283 FERGS-----TTTYSSFRKNYYSKPWSNKETDM 310


>AF298152-1|AAG30221.1| 1372|Homo sapiens RNA polymerase III
           transcription initiation factor B'' short protein.
          Length = 1372

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
 Frame = +3

Query: 261 ATPKPQGTSFLLKQDNGMTMYSCQKVEMDDQGKILLDESSLTKKSL----PC-AHRNLSF 425
           +TP  +      + D+G  +    +V++ + G I+LDE SLT + L    PC    N   
Sbjct: 225 STPNAEDNGMEEETDDGPLLVP--RVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPI 282

Query: 426 IERNQRCPSPTSSVLSSKRSYQPIPYSHYQNEV 524
            ER       T++  S +++Y   P+S+ + ++
Sbjct: 283 FERGS-----TTTYSSFRKNYYSKPWSNKETDM 310


>AF298151-1|AAG30220.1| 1388|Homo sapiens RNA polymerase III
           transcription initiation factor B'' protein.
          Length = 1388

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
 Frame = +3

Query: 261 ATPKPQGTSFLLKQDNGMTMYSCQKVEMDDQGKILLDESSLTKKSL----PC-AHRNLSF 425
           +TP  +      + D+G  +    +V++ + G I+LDE SLT + L    PC    N   
Sbjct: 225 STPNAEDNGMEEETDDGPLLVP--RVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPI 282

Query: 426 IERNQRCPSPTSSVLSSKRSYQPIPYSHYQNEV 524
            ER       T++  S +++Y   P+S+ + ++
Sbjct: 283 FERGS-----TTTYSSFRKNYYSKPWSNKETDM 310


>AF176695-1|AAG09268.1|  846|Homo sapiens transcription factor IIIB
           150 protein.
          Length = 846

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
 Frame = +3

Query: 261 ATPKPQGTSFLLKQDNGMTMYSCQKVEMDDQGKILLDESSLTKKSL----PC-AHRNLSF 425
           +TP  +      + D+G  +    +V++ + G I+LDE SLT + L    PC    N   
Sbjct: 225 STPNAEDNEMEEETDDGPLLVP--RVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPI 282

Query: 426 IERNQRCPSPTSSVLSSKRSYQPIPYSHYQNEV 524
            ER       T++  S +++Y   P+S+ + ++
Sbjct: 283 FERGS-----TTTYSSFRKNYYSKPWSNKETDM 310


>AB051476-1|BAB21780.3| 2627|Homo sapiens KIAA1689 protein protein.
          Length = 2627

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
 Frame = +3

Query: 261 ATPKPQGTSFLLKQDNGMTMYSCQKVEMDDQGKILLDESSLTKKSL----PC-AHRNLSF 425
           +TP  +      + D+G  +    +V++ + G I+LDE SLT + L    PC    N   
Sbjct: 228 STPNAEDNEMEEETDDGPLLVP--RVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPI 285

Query: 426 IERNQRCPSPTSSVLSSKRSYQPIPYSHYQNEV 524
            ER       T++  S +++Y   P+S+ + ++
Sbjct: 286 FERGS-----TTTYSSFRKNYYSKPWSNKETDM 313


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,923,369
Number of Sequences: 237096
Number of extensions: 1561627
Number of successful extensions: 4524
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4524
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)