Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23j08
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.49 
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   3.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.0  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 186 RDSIGVIEVSTRMSFLGKEIMTSFCATPKPQGTSFLL 296
           R S+G+  V T M+FLG E  T     P P    F +
Sbjct: 245 RVSLGITTVLT-MTFLGLEARTDLPKVPYPTALDFFV 280


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +1

Query: 406 RIAIFHSLKEIKGVRVQHQAFC 471
           R  + H++KE++ + +Q++ FC
Sbjct: 74  RKVLVHNVKELEVLMMQNRKFC 95


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 124 VQHRHHCPKI 153
           + H HHCP+I
Sbjct: 470 LHHWHHCPEI 479


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +3

Query: 321 YSCQKVEMDDQGKILLDESSLTKKSLPCAHRNLSFIERNQRCPSPTSSVLSSKRS 485
           ++ +K +    GKIL  E +L     P   RN+     N       ++ +S+ R+
Sbjct: 339 FARKKTDYSSFGKILATEPTLFSNVTPKFPRNIDEYNNNDLDTKKWNNKISALRA 393


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 225  SFLGKE-IMTSFCATPKPQGTS 287
            SF+  E  MT  CA+P P  TS
Sbjct: 1739 SFMYHEHAMTEGCASPPPAATS 1760


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 225  SFLGKE-IMTSFCATPKPQGTS 287
            SF+  E  MT  CA+P P  TS
Sbjct: 1735 SFMYHEHAMTEGCASPPPAATS 1756


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 111 DNIMCTTSTP 140
           DN+MC TS P
Sbjct: 710 DNVMCRTSGP 719


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 172 PQDRWYKFLD 143
           P  RWYKF++
Sbjct: 242 PVHRWYKFIE 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,068
Number of Sequences: 438
Number of extensions: 3504
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)