Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23j07
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    29   0.30 
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    27   1.2  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    26   2.8  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    26   2.8  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    26   3.7  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   3.7  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   4.9  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    25   4.9  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   4.9  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    25   6.5  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   6.5  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    25   8.5  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   8.5  
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    25   8.5  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    25   8.5  

>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +2

Query: 206 KRMTEKGFEGEQSTSSWDVPGPSSLGAILDTAFTSSADNQQRNEEMECDALFAESDDE 379
           K  T  G     S S  D    SSL    D  F    ++   N+E+E     AE+D+E
Sbjct: 41  KNTTSSGSSESDSMSQNDKKKDSSLNESEDEDFAGFGESASENDELESAESEAENDEE 98


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 380 VEVLPTSDIASNILNEQVPKPVSSNYVNSTISNPTFDVNLQP 505
           V+  PTSD+ S +         S N  N+ IS  TF  +L P
Sbjct: 202 VDSFPTSDVRSLVAGTPATDDFSHNKPNNQISISTFYSSLDP 243


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 389 LPTSDIASNILNEQVPKPVSSNYVNSTISNP 481
           +PTS+ +S+I N  +  PVSS    +  +NP
Sbjct: 193 IPTSEASSSINNTPLQAPVSSFADQNAFTNP 223


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 332 NEEMECDALFAESDDEVEV-LPTSDIASNILNEQVPKPVSSNYVNSTISNPTFDVN 496
           +E  + D L AE     +V LP  D   ++    VPK    N+  + + +PTF +N
Sbjct: 781 SESTQLDQLLAEDSSTDDVSLPHLDTI-DLDGSPVPKVPDLNFSRANMDSPTFILN 835


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 241 VYVFLGRSRTVVSGCYS 291
           +Y F GRS  +V GCYS
Sbjct: 241 LYGFSGRSNKLVDGCYS 257


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 203 LKRMTEKG-FEGEQSTSSWDVPGPSSLGAILDTAFTSSADNQQR 331
           +K+ T+   F+  +ST+S+ +PG +SLG  L+         +QR
Sbjct: 612 IKKFTQAVLFQSTKSTASFQLPGWTSLGMDLENTKLHIHQEEQR 655


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
 Frame = -3

Query: 386 PPLHHHSQQTK--HHTPFLHF 330
           PP  HH   T+  HH P  HF
Sbjct: 164 PPTQHHHPHTRPPHHPPHPHF 184


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 139 LINHFIGYGRILKHT*LFLT*IFKKNKYEISLFNFV 32
           LIN  I YG  L H  LFL   F +N    + FNF+
Sbjct: 343 LINTIIDYGMSLFH--LFLFAAFIRNNSLYTSFNFI 376


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 18/69 (26%), Positives = 27/69 (39%)
 Frame = +2

Query: 236 EQSTSSWDVPGPSSLGAILDTAFTSSADNQQRNEEMECDALFAESDDEVEVLPTSDIASN 415
           E +T   +V  PS    I  + F+      +   E   D        E +   T+D+ +N
Sbjct: 453 ESTTRKSEVEPPSPSKEIKSSHFSVPEFKFEPKTEATTDKKLNVPKFEFKPTATADVQTN 512

Query: 416 ILNEQVPKP 442
            L E  PKP
Sbjct: 513 RLKENEPKP 521


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 383 EVLPTSDIASNILNEQVPKPVSSNYVNSTISNPTFDVNL 499
           +V PT+     +     P    SN V   ISNP  + NL
Sbjct: 310 DVRPTAKYCKEVFFPLPPSASKSNSVPQKISNPKVEQNL 348


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 227 FEGEQSTSSWDVP-GPSSLGAILDTAFTSSADNQQRNEEMECDALFAESDDEVEVLPTSD 403
           F    STS+ D    PSS  A+ +++   + D  + N+E+  +A  +    + +   TS+
Sbjct: 409 FSSYSSTSNTDKSLRPSSYSAVSESS-NFTHDVSRDNKEISLNAPKSIIVSQSDSFDTSN 467

Query: 404 IASNILNEQVPKPVSSNYVNS 466
           +  +  N+   +P+S    N+
Sbjct: 468 VTQDAPNDVEKEPISGQMPNN 488


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 18/75 (24%), Positives = 30/75 (40%)
 Frame = +2

Query: 221 KGFEGEQSTSSWDVPGPSSLGAILDTAFTSSADNQQRNEEMECDALFAESDDEVEVLPTS 400
           K      ST  W++   SS   I D+         Q   + +    F ++ DE++ L   
Sbjct: 55  KNDSSNSSTYRWNIDLLSSTATIDDSVAKRRKLAVQNLLQYDSTQTF-QTGDEIDELIGK 113

Query: 401 DIASNILNEQVPKPV 445
            + SN+LN     P+
Sbjct: 114 SVGSNVLNVLRSNPI 128


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +2

Query: 242 STSSWDVPGPSSLGAILDTAFTSSADNQQRNEEMECDALFAESDDEVEVLPTSDIASNIL 421
           +++S D    S   +I DT+  SSA ++Q N      +L +  D+     P  ++ SN  
Sbjct: 431 NSTSLDADRDSDTSSISDTSSNSSAPHEQLN----ATSLASTVDESSRSPPLPEVESNKE 486

Query: 422 NE 427
           N+
Sbjct: 487 ND 488


>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 17/74 (22%), Positives = 34/74 (45%)
 Frame = +2

Query: 209 RMTEKGFEGEQSTSSWDVPGPSSLGAILDTAFTSSADNQQRNEEMECDALFAESDDEVEV 388
           R  E  +E E  T++  +   SSL +++          ++R  E + +    E D++VE+
Sbjct: 91  RTLESSYEDETETAN-KLSRVSSLVSVIRQTIDRKKSLERRVREEQEEKTDNEDDNDVEI 149

Query: 389 LPTSDIASNILNEQ 430
                + +N L E+
Sbjct: 150 STQESLENNGLAEK 163


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 416 YLMQYQMWVAPPLHHHSQQTKHHTP 342
           Y++Q  + + PP+H H ++ K   P
Sbjct: 341 YVIQETLRLHPPIHSHMRKVKRDLP 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,781
Number of Sequences: 5004
Number of extensions: 42046
Number of successful extensions: 150
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)