Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23j07
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    31   0.63 
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei...    31   0.63 
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot...    31   0.63 
AC026301-2|AAK68896.2|  320|Caenorhabditis elegans Hypothetical ...    30   1.1  
U23449-3|AAC24301.1|  579|Caenorhabditis elegans Nuclear hormone...    29   1.9  
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z75546-8|CAC42331.2|  640|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF025450-4|AAO38668.1|  373|Caenorhabditis elegans Hypothetical ...    27   5.8  
Z50741-4|CAO82050.1|  190|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U58761-1|AAB00712.1|  333|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 320 NQQRNEEMECDALFAESDDEVEVLPTSDIASNILNEQVPKPVSSN 454
           N+ R      + +   SDDE+EV+P     + ++ EQ PK +  N
Sbjct: 26  NRTRPAPTPIEYITLSSDDEIEVIPPPPKRAKMMEEQKPKDLLEN 70


>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
           protein.
          Length = 1908

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +2

Query: 95  CMFKYSPITNEMVNQPFLTQTVRVS*IIKVQYGITLL-KRMTEKGFEGEQSTSSWDVPGP 271
           C FKY  +T+E +       T+    ++   YG +LL    T  GF    S + + V G 
Sbjct: 746 CEFKYGTVTHEKIAMRTSDDTITCDEMLFEPYGTSLLGSGSTPYGFNVIWSATGFAV-GK 804

Query: 272 SSLGAILDTAFTSSAD 319
            S+  +LD   + + D
Sbjct: 805 KSINRVLDNVASLAID 820


>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
           protein.
          Length = 1951

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +2

Query: 95  CMFKYSPITNEMVNQPFLTQTVRVS*IIKVQYGITLL-KRMTEKGFEGEQSTSSWDVPGP 271
           C FKY  +T+E +       T+    ++   YG +LL    T  GF    S + + V G 
Sbjct: 752 CEFKYGTVTHEKIAMRTSDDTITCDEMLFEPYGTSLLGSGSTPYGFNVIWSATGFAV-GK 810

Query: 272 SSLGAILDTAFTSSAD 319
            S+  +LD   + + D
Sbjct: 811 KSINRVLDNVASLAID 826


>AC026301-2|AAK68896.2|  320|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.5 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -1

Query: 190 ILHFNNSGNSDCLRQKRLINHFIGYGRILKHT*LFLT*IFKKNKYEISLFNFVI 29
           I  FN     DCL Q R    F  +   LK   + +  +F  NK++I L NF I
Sbjct: 193 IKEFNQLERLDCLDQWRSAKTFQSWHLPLKEAEIKIEQLFHFNKFKIKLENFSI 246


>U23449-3|AAC24301.1|  579|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 22 protein.
          Length = 579

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 392 PTSDIASNILNEQVPKPVSSNYVNSTISNPTFDVNLQP 505
           P +D+  N   +  P P S +  +S  S+P++D+  QP
Sbjct: 12  PPTDLFKNTFEDVPPSPESLDVGDSLGSSPSYDLGFQP 49


>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical protein
            C52E12.4 protein.
          Length = 1487

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 92   LCMFKYSPITNEMVNQP-FLTQTVRVS*IIKVQYGIT 199
            L + +YSP+T +M N+P FL     ++ + K+ Y ++
Sbjct: 1436 LPLMRYSPVTADMYNEPSFLRTPAHMTYLAKLMYSLS 1472


>Z75546-8|CAC42331.2|  640|Caenorhabditis elegans Hypothetical
           protein R05D11.9 protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 359 FAESDDEVEVLPTSDIASNILNEQVPKPVSSNYVNSTISNPTFDV 493
           F++ DD V +    +I+SNI++     P+S   ++    NP  D+
Sbjct: 11  FSQMDDVVSIC--REISSNIISTDKNVPISKMIIHKIFKNPHIDL 53


>Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical
           protein F39B2.1 protein.
          Length = 564

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 389 APPLHHHSQQTKHHTPFLHFSVDCQ 315
           APP HHH          LH+ +D Q
Sbjct: 46  APPHHHHHHHQHQPQQHLHYMIDSQ 70


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +2

Query: 317  DNQQRNEEMECDALFAESDDEVEVLPTSDIASNILNEQVPKPVSSNYVNSTISNPTF 487
            +   R  ++E + +F  S ++  ++ T D  SN    Q  +P+ S   +S  S P F
Sbjct: 1287 EQSDRLNKLENERIFGTSPEKTPLIET-DFRSNFNMNQPSRPIPSQPPSSQYSPPVF 1342


>AF025450-4|AAO38668.1|  373|Caenorhabditis elegans Hypothetical
           protein C41H7.3 protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 291 WILPSHLVLTINREMKKWSVMLCLLRVMMKWRCYPHLILHQIYL 422
           W+  +  +  I R+M K    L L   + KW  YPH I ++ YL
Sbjct: 107 WLRRNLQLYIIQRKMDK----LTLDAELAKWELYPHFIYYRQYL 146


>Z50741-4|CAO82050.1|  190|Caenorhabditis elegans Hypothetical
           protein F55G7.4 protein.
          Length = 190

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -1

Query: 196 YPILHFNNSGNSDCLRQKRLINHFIGY 116
           +PI   +N  +++ + ++RLINH++ Y
Sbjct: 36  FPIYSLSNPESAEEVIEERLINHYVSY 62


>U58761-1|AAB00712.1|  333|Caenorhabditis elegans Hypothetical
           protein C01F1.4 protein.
          Length = 333

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 431 PVR*VYLMQYQMWVAPPL 378
           P+R +Y+M + MW  PP+
Sbjct: 126 PIRTIYIMIFFMWATPPM 143


>U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical
           protein C18A3.9 protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 17  IFVXNNKIEQTYFVFVFLENSC*K*LCMFKYSPI 118
           I + NN     Y++F+ L N C   L +F YS I
Sbjct: 80  IIIVNNFFVFMYYIFLVLVNVCNNNLLIFYYSSI 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,439,009
Number of Sequences: 27780
Number of extensions: 231340
Number of successful extensions: 763
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)