Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23j05
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    26   5.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.2  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    25   9.5  

>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 543 RRHVYDPPYNKLCVADASNYRRSETRVVRKADFGLREPN 427
           +R +   P N +CV    N  RSE  ++ ++   LR+PN
Sbjct: 92  KRAISMSPGNVVCVFGKINSFRSEVELIAQSFEELRDPN 130


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 459  RKADFGLREPNYMTDLPSEYSRSRASVARRLYRHIRCDTGHSSR 328
            RK   GLR+      L S   + ++      Y+ I CDT  ++R
Sbjct: 1881 RKYFNGLRKQEIDVKLKSRSDKEKSCTVSESYKQIDCDTYEATR 1924


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 471 TRVVRKADFGLREPNYMTDLPSEYSRSRASVARRLYRH 358
           T  + + DF L + ++ TD+ S  S++ +     L RH
Sbjct: 24  TNTILEEDFNLLDNSFQTDISSTSSQNDSKFTCLLVRH 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,986
Number of Sequences: 5004
Number of extensions: 50422
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)