Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23j02
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    27   1.2  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    26   2.8  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   3.7  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   3.7  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   4.9  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   4.9  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    25   6.5  
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    25   8.5  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   8.5  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   8.5  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   8.5  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   8.5  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   8.5  

>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 291 DGVTTPTSHGTFQIYEQGSRNSASSTHWDTIMFSGMQGDDDIPGI 425
           D VTT +  G   +Y QG+ +     +W   +F   Q  +++P +
Sbjct: 50  DWVTTSSCSGRISVYVQGANSRKGGGYW---LFVSHQAHEELPPV 91


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 237 EHHAHSQCLRPFCKLIDKSFLFLLLTTSKE 148
           +HH    CL   C  +DK+ +   L T+KE
Sbjct: 72  QHHKIPACLHLTCTNVDKAIIDKALETAKE 101


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 361  AALIGTQLCSQEC--KVMMIFLELDNMKISILLIGKEILR 474
            A+LI T  CS       + +   L ++  + +LIGKE+LR
Sbjct: 2623 ASLITTDSCSSRTFQNALSVMFHLSSIPKAKILIGKELLR 2662


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 266  DIYHFILTAMSTTPIRSVCAL-FVN 195
            D  H  L  +STTP++  C L FVN
Sbjct: 952  DAAHVALMVLSTTPLKKSCLLDFVN 976


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 23  VCYVFSFVFLKFFKTMTVAFNT 88
           VC+V S +F+  F T+TV   T
Sbjct: 387 VCFVVSCIFVSIFDTLTVLLLT 408


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 464 SLPINSME-IFILSNSRNIIITLHS*EH 384
           SLP+  +  IF+LSN+ N+ +T  S  H
Sbjct: 39  SLPLEVLRLIFLLSNNSNLAVTSRSLRH 66


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 150 PLKSSVTKTGMTYQSVYKKGANTANGRGAHSGEDEMVD 263
           PL++  T +   Y+S    GA+T   R  +  EDE  D
Sbjct: 143 PLRAVSTVSLTPYKSELPSGASTTQNRSPNDEEDEDED 180


>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +3

Query: 213 NTANGRGAHSGEDEMVDITPGLQ---QAADGVTTPTS 314
           ++A+    HSG D  +D+  GL       +G TTP S
Sbjct: 10  DSADELSVHSGNDNEIDLEKGLLPKCNTGNGGTTPCS 46


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 207  PFCKLIDKSFLFLLLTTSKETSP 139
            P CKL+ +S +  L  TS  TSP
Sbjct: 1131 PLCKLLARSVIQSLEKTSHNTSP 1153


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 252 EMVDITPGLQQAADGVTTPTSHGTFQIYEQGSRNSASS 365
           E VD++P  Q+    +   T H T Q+ ++  + S+S+
Sbjct: 107 EQVDLSPNKQEDKKDLHIVTQHITPQLTKESKKGSSSA 144


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 308 GCGDAVRRLLEARRDIYHFILTAMSTTPIRSVCAL 204
           G GD   R  E   D++H++    S  P R +  L
Sbjct: 287 GKGDGNIRYYEYENDVFHYLSEFKSVDPQRGIAFL 321


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 415 FLELDNMKISILLIGKEILREIAC 486
           F   D  K+++L +GK++ +EI C
Sbjct: 58  FQTYDCEKLNLLFVGKQLDKEITC 81


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/39 (20%), Positives = 24/39 (61%)
 Frame = +3

Query: 156 KSSVTKTGMTYQSVYKKGANTANGRGAHSGEDEMVDITP 272
           ++++ +TG + +++++   +T +G  +HS   +  D +P
Sbjct: 312 RTTIRRTGASIRTIHRGKTSTLSGNRSHSILQKPTDTSP 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,827
Number of Sequences: 5004
Number of extensions: 37496
Number of successful extensions: 130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)