Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23j02
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 29 2.8
01_06_0273 + 28073759-28074387,28074885-28075428,28076240-28076401 28 3.7
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 28 4.9
07_01_1047 + 9161305-9161709,9162307-9162444,9162682-9162971,916... 28 4.9
06_01_0898 + 6908826-6908974,6909059-6909428,6909510-6909929,691... 28 4.9
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 28 4.9
10_08_0135 - 15118082-15118300,15118388-15118546,15118783-151188... 27 6.5
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845... 27 8.6
02_02_0006 - 6037539-6038570 27 8.6
01_05_0270 - 20271859-20272866,20273043-20273058,20273455-202737... 27 8.6
01_03_0162 + 13342996-13344216 27 8.6
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 192 SVYKKGANTANGRGAHSGEDEMVDITPGLQQAADGVTTPT-SHGTFQIYEQ 341
S+Y ++ GR + EDE + + P ++ D PT S+G+F YE+
Sbjct: 691 SMYSSSLSSGYGRRKSAKEDESLSLDPVSRR--DSAAQPTSSYGSFTTYEK 739
>01_06_0273 + 28073759-28074387,28074885-28075428,28076240-28076401
Length = 444
Score = 28.3 bits (60), Expect = 3.7
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = +3
Query: 177 GMTYQSVYKKGANTANGRGAHSGEDEMVDITPGLQQAADGVTTPTSHGTFQIYEQGSRNS 356
G +S+ N+++G EDE VD+ + ++G T+ G + E G N
Sbjct: 234 GADTKSIILDDGNSSHGS---KSEDEKVDLGSITESPSEGETSGEKSGRSESEENG--NG 288
Query: 357 ASSTHWDTIMFSGMQGDDDIPGIGQYE 437
+ TI G GD G+ ++E
Sbjct: 289 VQESREPTIRSEGECGDFISDGVVEHE 315
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 293 RRHHTHKPRNLPDLR 337
RRHH H+PR P LR
Sbjct: 32 RRHHRHRPRPCPTLR 46
>07_01_1047 +
9161305-9161709,9162307-9162444,9162682-9162971,
9163477-9163759,9163839-9163952
Length = 409
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 327 QIYEQGSRNSASSTHWDTIMFSGMQGDDDIPGIGQYEDF 443
+IY+ + SA + WD + SG + D P +G +DF
Sbjct: 303 KIYDWSAIKSALNEAWDQYVASGGRHKDGHPKLGHTKDF 341
>06_01_0898 +
6908826-6908974,6909059-6909428,6909510-6909929,
6910017-6910315,6910390-6910648,6910732-6911041,
6911126-6911251,6911373-6911417,6911652-6911702,
6912041-6912153
Length = 713
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 279 QQAADGVTTPTSHGTFQIYEQGSRNSASSTHWDTIMFSGMQGDDDIPGIG 428
Q G T +S G +Y+QGS +A+S H + ++ D G+G
Sbjct: 566 QAPVPGGQTSSSTGLSGLYQQGSTQAATSQHIAPLPKGFVRPSDVFAGVG 615
>04_04_0214 -
23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 383 NCVPMSAARGISASLFVDLEGSVACG 306
NCV ++ A G +F+D +G V CG
Sbjct: 819 NCVYVTCAFGECKPVFIDWQGRVCCG 844
>10_08_0135 -
15118082-15118300,15118388-15118546,15118783-15118849,
15118969-15119141,15119602-15119698,15119782-15119900,
15120000-15120140,15120214-15120298,15120411-15120612,
15120906-15120970,15121365-15121654
Length = 538
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 269 AGPPASGGRRHHTHKPRNLPDL 334
AG PA GG+ H K ++PDL
Sbjct: 47 AGAPAGGGKGRHLAKALSVPDL 68
>09_04_0259 -
16182190-16182360,16183185-16183262,16184431-16184586,
16184913-16185092,16185875-16186027
Length = 245
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 297 VTTPTSHGTFQIYEQGSRNSASSTHWDTIMFSGMQGDDDIPGIGQY 434
+ T T+ G + E GSR S T +T+M+S G + G+Y
Sbjct: 187 IGTVTAVGPGPLVEDGSRKPLSITPGNTVMYSKYAGSEFKGEDGEY 232
>02_02_0006 - 6037539-6038570
Length = 343
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 291 DGVTTPTSHGTFQIYEQGSRNSASSTHWDTIMFSGMQGDDD 413
DGVT+P G+ +YE+ + S +D + S +QG+ D
Sbjct: 266 DGVTSP--EGSRMLYERAASEDKSLILYDGMYHSLIQGESD 304
>01_05_0270 -
20271859-20272866,20273043-20273058,20273455-20273756,
20273932-20274231
Length = 541
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +3
Query: 309 TSHGTFQIYEQGSRNSASSTH---WDTIMFS-GMQGDDDIPGIGQYEDF 443
+S +F IY Q S +SA+ D + + +QG ++ P IG+YE++
Sbjct: 19 SSAASFNIYSQVSSSSAAHAPRAGLDGLDLNFNLQGAEEFPHIGEYENY 67
>01_03_0162 + 13342996-13344216
Length = 406
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 260 RYHAGPPASGGRRHHTHKPRNLPDLRTRKPKFREQHSLG 376
RY A PP R HTH+ +LR R+ K + G
Sbjct: 45 RYRALPPEVRATRAHTHRGYLERELRARRAKLAKVREEG 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,730,194
Number of Sequences: 37544
Number of extensions: 251711
Number of successful extensions: 785
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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