Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23j02
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68334-2|CAA92728.2|  797|Caenorhabditis elegans Hypothetical pr...    52   3e-07
Z54216-10|CAA90949.2|  797|Caenorhabditis elegans Hypothetical p...    52   3e-07
AF173174-1|AAF13167.1|  796|Caenorhabditis elegans CLC chloride ...    52   3e-07
AB035090-1|BAA86959.1|  797|Caenorhabditis elegans clc chloride ...    52   3e-07
AF016684-9|AAB66212.2|  348|Caenorhabditis elegans Hypothetical ...    27   5.8  

>Z68334-2|CAA92728.2|  797|Caenorhabditis elegans Hypothetical
           protein C07H4.2 protein.
          Length = 797

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 6/38 (15%)
 Frame = +3

Query: 405 DDDIPGI------GQYEDFHTIDWQRDIARDRMRHRYI 500
           DDD+P +       +Y DFHTIDWQRD+ARDR+RH+ I
Sbjct: 56  DDDLPDVMAPPFFSKYGDFHTIDWQRDLARDRLRHKMI 93


>Z54216-10|CAA90949.2|  797|Caenorhabditis elegans Hypothetical
           protein C07H4.2 protein.
          Length = 797

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 6/38 (15%)
 Frame = +3

Query: 405 DDDIPGI------GQYEDFHTIDWQRDIARDRMRHRYI 500
           DDD+P +       +Y DFHTIDWQRD+ARDR+RH+ I
Sbjct: 56  DDDLPDVMAPPFFSKYGDFHTIDWQRDLARDRLRHKMI 93


>AF173174-1|AAF13167.1|  796|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 796

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 6/38 (15%)
 Frame = +3

Query: 405 DDDIPGI------GQYEDFHTIDWQRDIARDRMRHRYI 500
           DDD+P +       +Y DFHTIDWQRD+ARDR+RH+ I
Sbjct: 56  DDDLPDVMAPPFFSKYGDFHTIDWQRDLARDRLRHKMI 93


>AB035090-1|BAA86959.1|  797|Caenorhabditis elegans clc chloride
           channel homologue protein.
          Length = 797

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 6/38 (15%)
 Frame = +3

Query: 405 DDDIPGI------GQYEDFHTIDWQRDIARDRMRHRYI 500
           DDD+P +       +Y DFHTIDWQRD+ARDR+RH+ I
Sbjct: 56  DDDLPDVMAPPFFSKYGDFHTIDWQRDLARDRLRHKMI 93


>AF016684-9|AAB66212.2|  348|Caenorhabditis elegans Hypothetical
           protein F45C12.14 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 8/34 (23%), Positives = 23/34 (67%)
 Frame = +1

Query: 364 ALIGTQLCSQECKVMMIFLELDNMKISILLIGKE 465
           +++   +CS++CK ++  +++D+ K  I+++  E
Sbjct: 26  SILSFSMCSEDCKALIQDMKIDSRKCKIVVLFSE 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,032,893
Number of Sequences: 27780
Number of extensions: 219409
Number of successful extensions: 595
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)