Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23j01
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.30 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.5  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   8.6  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   8.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 100 FEKPLPHLSLPDWDARLYG 156
           FE+PLP L LP  D  L+G
Sbjct: 471 FEEPLPSLPLPGADDDLFG 489


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 363 QTSHFAVNAVKQFLERGLPLFNFVNPCT*SVIVV 262
           +T+ FAV  +   LER + L      C   V++V
Sbjct: 246 KTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIV 279


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 276 SVIVVVAVPFGLDPRLISELMGTVPQVKSVCSSCIGSHLQTV 151
           +++V+ A    ++   I EL   +  V+ +C +  G   QTV
Sbjct: 3   TIVVIFAFCICVNAMTIEELKIQLHDVQEICKTESGIDQQTV 44


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 276 SVIVVVAVPFGLDPRLISELMGTVPQVKSVCSSCIGSHLQTV 151
           +++V+ A    ++   I EL   +  V+ +C +  G   QTV
Sbjct: 3   TIVVIFAFCICVNAMTIEELKIQLRDVQEICKAESGIDQQTV 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,566
Number of Sequences: 438
Number of extensions: 3088
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)