Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23i24
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 335 VPFPTTSISSNIPAGSFSALRSMSSNE 255
           +PFP   I SN P   +  +R + + E
Sbjct: 305 LPFPQRPIWSNFPIYKYKYIREIMNKE 331


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 335 VPFPTTSISSNIPAGSFSALRSMSSNE 255
           +PFP   I SN P   +  +R + + E
Sbjct: 305 LPFPQRPIWSNFPIYKYKYIREIMNKE 331


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 291 SCWNI*TDRSGRKWNLWTGL*GE 359
           S + +  D+ GR W L TG+ GE
Sbjct: 122 SVYRMQVDKCGRLWILDTGILGE 144


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 158 KTPKLGHWQ 132
           K P +GHWQ
Sbjct: 378 KNPAMGHWQ 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,935
Number of Sequences: 438
Number of extensions: 3021
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)