Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23i22
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 121 7e-29
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 121 7e-29
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 121 7e-29
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 121 7e-29
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 121 7e-29
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 121 7e-29
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 121 7e-29
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 121 7e-29
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 121 7e-29
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 121 7e-29
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 121 7e-29
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 27 3.0
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 3.9
SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.9
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 26 5.2
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 6.8
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.0
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 121 bits (292), Expect = 7e-29
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 5/210 (2%)
Frame = +2
Query: 2 DKTNAIMTFPVPKNLKEVHSFIGLTSYFRKFIEKYALIAKPLSDLLKKG-XXXXXXXXXX 178
+ + ++ + PKN KE+ F+G +Y RKFI K + + PL++LLKK
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQ 684
Query: 179 XXXXLKSKLCNNPVLKIFDIHLETELHTDASMYGYAAILLQRDPNDNCMHPVHYMSRKTS 358
+K L + PVL+ FD + L TDAS A+L Q+ +D +PV Y S K S
Sbjct: 685 AIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK-YYPVGYYSAKMS 743
Query: 359 DAQQKCSSYELEALAVIEGVKKFRRYLIG--KPFKIVTDCEAF--QKTLNKKDVSAKVAR 526
AQ S + E LA+I+ +K +R YL +PFKI+TD + T + + ++AR
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR 803
Query: 527 WILYLQDFDFSIEHRTGDRMQHVDALSRNV 616
W L+LQDF+F I +R G DALSR V
Sbjct: 804 WQLFLQDFNFEINYRPGSANHIADALSRIV 833
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 121 bits (292), Expect = 7e-29
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 5/210 (2%)
Frame = +2
Query: 2 DKTNAIMTFPVPKNLKEVHSFIGLTSYFRKFIEKYALIAKPLSDLLKKG-XXXXXXXXXX 178
+ + ++ + PKN KE+ F+G +Y RKFI K + + PL++LLKK
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQ 684
Query: 179 XXXXLKSKLCNNPVLKIFDIHLETELHTDASMYGYAAILLQRDPNDNCMHPVHYMSRKTS 358
+K L + PVL+ FD + L TDAS A+L Q+ +D +PV Y S K S
Sbjct: 685 AIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK-YYPVGYYSAKMS 743
Query: 359 DAQQKCSSYELEALAVIEGVKKFRRYLIG--KPFKIVTDCEAF--QKTLNKKDVSAKVAR 526
AQ S + E LA+I+ +K +R YL +PFKI+TD + T + + ++AR
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR 803
Query: 527 WILYLQDFDFSIEHRTGDRMQHVDALSRNV 616
W L+LQDF+F I +R G DALSR V
Sbjct: 804 WQLFLQDFNFEINYRPGSANHIADALSRIV 833
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 121 bits (292), Expect = 7e-29
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 5/210 (2%)
Frame = +2
Query: 2 DKTNAIMTFPVPKNLKEVHSFIGLTSYFRKFIEKYALIAKPLSDLLKKG-XXXXXXXXXX 178
+ + ++ + PKN KE+ F+G +Y RKFI K + + PL++LLKK
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQ 684
Query: 179 XXXXLKSKLCNNPVLKIFDIHLETELHTDASMYGYAAILLQRDPNDNCMHPVHYMSRKTS 358
+K L + PVL+ FD + L TDAS A+L Q+ +D +PV Y S K S
Sbjct: 685 AIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK-YYPVGYYSAKMS 743
Query: 359 DAQQKCSSYELEALAVIEGVKKFRRYLIG--KPFKIVTDCEAF--QKTLNKKDVSAKVAR 526
AQ S + E LA+I+ +K +R YL +PFKI+TD + T + + ++AR
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR 803
Query: 527 WILYLQDFDFSIEHRTGDRMQHVDALSRNV 616
W L+LQDF+F I +R G DALSR V
Sbjct: 804 WQLFLQDFNFEINYRPGSANHIADALSRIV 833
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 121 bits (292), Expect = 7e-29
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 5/210 (2%)
Frame = +2
Query: 2 DKTNAIMTFPVPKNLKEVHSFIGLTSYFRKFIEKYALIAKPLSDLLKKG-XXXXXXXXXX 178
+ + ++ + PKN KE+ F+G +Y RKFI K + + PL++LLKK
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQ 684
Query: 179 XXXXLKSKLCNNPVLKIFDIHLETELHTDASMYGYAAILLQRDPNDNCMHPVHYMSRKTS 358
+K L + PVL+ FD + L TDAS A+L Q+ +D +PV Y S K S
Sbjct: 685 AIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK-YYPVGYYSAKMS 743
Query: 359 DAQQKCSSYELEALAVIEGVKKFRRYLIG--KPFKIVTDCEAF--QKTLNKKDVSAKVAR 526
AQ S + E LA+I+ +K +R YL +PFKI+TD + T + + ++AR
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR 803
Query: 527 WILYLQDFDFSIEHRTGDRMQHVDALSRNV 616
W L+LQDF+F I +R G DALSR V
Sbjct: 804 WQLFLQDFNFEINYRPGSANHIADALSRIV 833
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 121 bits (292), Expect = 7e-29
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 5/210 (2%)
Frame = +2
Query: 2 DKTNAIMTFPVPKNLKEVHSFIGLTSYFRKFIEKYALIAKPLSDLLKKG-XXXXXXXXXX 178
+ + ++ + PKN KE+ F+G +Y RKFI K + + PL++LLKK
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQ 684
Query: 179 XXXXLKSKLCNNPVLKIFDIHLETELHTDASMYGYAAILLQRDPNDNCMHPVHYMSRKTS 358
+K L + PVL+ FD + L TDAS A+L Q+ +D +PV Y S K S
Sbjct: 685 AIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK-YYPVGYYSAKMS 743
Query: 359 DAQQKCSSYELEALAVIEGVKKFRRYLIG--KPFKIVTDCEAF--QKTLNKKDVSAKVAR 526
AQ S + E LA+I+ +K +R YL +PFKI+TD + T + + ++AR
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR 803
Query: 527 WILYLQDFDFSIEHRTGDRMQHVDALSRNV 616
W L+LQDF+F I +R G DALSR V
Sbjct: 804 WQLFLQDFNFEINYRPGSANHIADALSRIV 833
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 121 bits (292), Expect = 7e-29
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 5/210 (2%)
Frame = +2
Query: 2 DKTNAIMTFPVPKNLKEVHSFIGLTSYFRKFIEKYALIAKPLSDLLKKG-XXXXXXXXXX 178
+ + ++ + PKN KE+ F+G +Y RKFI K + + PL++LLKK
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQ 684
Query: 179 XXXXLKSKLCNNPVLKIFDIHLETELHTDASMYGYAAILLQRDPNDNCMHPVHYMSRKTS 358
+K L + PVL+ FD + L TDAS A+L Q+ +D +PV Y S K S
Sbjct: 685 AIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK-YYPVGYYSAKMS 743
Query: 359 DAQQKCSSYELEALAVIEGVKKFRRYLIG--KPFKIVTDCEAF--QKTLNKKDVSAKVAR 526
AQ S + E LA+I+ +K +R YL +PFKI+TD + T + + ++AR
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR 803
Query: 527 WILYLQDFDFSIEHRTGDRMQHVDALSRNV 616
W L+LQDF+F I +R G DALSR V
Sbjct: 804 WQLFLQDFNFEINYRPGSANHIADALSRIV 833
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 121 bits (292), Expect = 7e-29
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 5/210 (2%)
Frame = +2
Query: 2 DKTNAIMTFPVPKNLKEVHSFIGLTSYFRKFIEKYALIAKPLSDLLKKG-XXXXXXXXXX 178
+ + ++ + PKN KE+ F+G +Y RKFI K + + PL++LLKK
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQ 684
Query: 179 XXXXLKSKLCNNPVLKIFDIHLETELHTDASMYGYAAILLQRDPNDNCMHPVHYMSRKTS 358
+K L + PVL+ FD + L TDAS A+L Q+ +D +PV Y S K S
Sbjct: 685 AIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK-YYPVGYYSAKMS 743
Query: 359 DAQQKCSSYELEALAVIEGVKKFRRYLIG--KPFKIVTDCEAF--QKTLNKKDVSAKVAR 526
AQ S + E LA+I+ +K +R YL +PFKI+TD + T + + ++AR
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR 803
Query: 527 WILYLQDFDFSIEHRTGDRMQHVDALSRNV 616
W L+LQDF+F I +R G DALSR V
Sbjct: 804 WQLFLQDFNFEINYRPGSANHIADALSRIV 833
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 121 bits (292), Expect = 7e-29
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 5/210 (2%)
Frame = +2
Query: 2 DKTNAIMTFPVPKNLKEVHSFIGLTSYFRKFIEKYALIAKPLSDLLKKG-XXXXXXXXXX 178
+ + ++ + PKN KE+ F+G +Y RKFI K + + PL++LLKK
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQ 684
Query: 179 XXXXLKSKLCNNPVLKIFDIHLETELHTDASMYGYAAILLQRDPNDNCMHPVHYMSRKTS 358
+K L + PVL+ FD + L TDAS A+L Q+ +D +PV Y S K S
Sbjct: 685 AIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK-YYPVGYYSAKMS 743
Query: 359 DAQQKCSSYELEALAVIEGVKKFRRYLIG--KPFKIVTDCEAF--QKTLNKKDVSAKVAR 526
AQ S + E LA+I+ +K +R YL +PFKI+TD + T + + ++AR
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR 803
Query: 527 WILYLQDFDFSIEHRTGDRMQHVDALSRNV 616
W L+LQDF+F I +R G DALSR V
Sbjct: 804 WQLFLQDFNFEINYRPGSANHIADALSRIV 833
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 121 bits (292), Expect = 7e-29
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 5/210 (2%)
Frame = +2
Query: 2 DKTNAIMTFPVPKNLKEVHSFIGLTSYFRKFIEKYALIAKPLSDLLKKG-XXXXXXXXXX 178
+ + ++ + PKN KE+ F+G +Y RKFI K + + PL++LLKK
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQ 684
Query: 179 XXXXLKSKLCNNPVLKIFDIHLETELHTDASMYGYAAILLQRDPNDNCMHPVHYMSRKTS 358
+K L + PVL+ FD + L TDAS A+L Q+ +D +PV Y S K S
Sbjct: 685 AIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK-YYPVGYYSAKMS 743
Query: 359 DAQQKCSSYELEALAVIEGVKKFRRYLIG--KPFKIVTDCEAF--QKTLNKKDVSAKVAR 526
AQ S + E LA+I+ +K +R YL +PFKI+TD + T + + ++AR
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR 803
Query: 527 WILYLQDFDFSIEHRTGDRMQHVDALSRNV 616
W L+LQDF+F I +R G DALSR V
Sbjct: 804 WQLFLQDFNFEINYRPGSANHIADALSRIV 833
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 121 bits (292), Expect = 7e-29
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 5/210 (2%)
Frame = +2
Query: 2 DKTNAIMTFPVPKNLKEVHSFIGLTSYFRKFIEKYALIAKPLSDLLKKG-XXXXXXXXXX 178
+ + ++ + PKN KE+ F+G +Y RKFI K + + PL++LLKK
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQ 684
Query: 179 XXXXLKSKLCNNPVLKIFDIHLETELHTDASMYGYAAILLQRDPNDNCMHPVHYMSRKTS 358
+K L + PVL+ FD + L TDAS A+L Q+ +D +PV Y S K S
Sbjct: 685 AIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK-YYPVGYYSAKMS 743
Query: 359 DAQQKCSSYELEALAVIEGVKKFRRYLIG--KPFKIVTDCEAF--QKTLNKKDVSAKVAR 526
AQ S + E LA+I+ +K +R YL +PFKI+TD + T + + ++AR
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR 803
Query: 527 WILYLQDFDFSIEHRTGDRMQHVDALSRNV 616
W L+LQDF+F I +R G DALSR V
Sbjct: 804 WQLFLQDFNFEINYRPGSANHIADALSRIV 833
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 121 bits (292), Expect = 7e-29
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 5/210 (2%)
Frame = +2
Query: 2 DKTNAIMTFPVPKNLKEVHSFIGLTSYFRKFIEKYALIAKPLSDLLKKG-XXXXXXXXXX 178
+ + ++ + PKN KE+ F+G +Y RKFI K + + PL++LLKK
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQ 684
Query: 179 XXXXLKSKLCNNPVLKIFDIHLETELHTDASMYGYAAILLQRDPNDNCMHPVHYMSRKTS 358
+K L + PVL+ FD + L TDAS A+L Q+ +D +PV Y S K S
Sbjct: 685 AIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK-YYPVGYYSAKMS 743
Query: 359 DAQQKCSSYELEALAVIEGVKKFRRYLIG--KPFKIVTDCEAF--QKTLNKKDVSAKVAR 526
AQ S + E LA+I+ +K +R YL +PFKI+TD + T + + ++AR
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR 803
Query: 527 WILYLQDFDFSIEHRTGDRMQHVDALSRNV 616
W L+LQDF+F I +R G DALSR V
Sbjct: 804 WQLFLQDFNFEINYRPGSANHIADALSRIV 833
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 49 RSTQLYRTNFVFQKIYRKVCTDS 117
R+ + + VFQK+Y K CT+S
Sbjct: 464 RNREYWNQLMVFQKLYSKYCTES 486
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 622 KKYVSAQCINMLHSISRSMFNRKVKVL-QV*YPTSHFCRYILFIQGLLK 479
+K + N +H + R +RK+++ + PT+ RY L + G+LK
Sbjct: 557 EKSTNRNFANYVHEVERLRESRKLELNGYLTKPTTRLARYPLLLSGVLK 605
>SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 125
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 186 SKACLSASSNLNSPFFNKSLSGL 118
SK C+S S LN+P N+S SG+
Sbjct: 38 SKLCIS-SEKLNTPMHNRSRSGI 59
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 510 DTSFLFRVF*KASQSVTILKGFPMRYLLNFFTPS 409
+ +FLF F + I FP+R L++FFT S
Sbjct: 163 EKTFLFGWFVSVDSFLYIFTLFPIRVLISFFTLS 196
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 557 KSQSLASIVSNEPLLQIHPFYSGSSEKL 474
K + + +VS E L ++H FYS + KL
Sbjct: 251 KDKFIEKLVSKEELTRVHAFYSLNDLKL 278
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 9.0
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -1
Query: 276 YIEASVCSSVSK*ISNIFKTGLLHNFDFNSSKACLSASSNLNSPFFNKSLSGLAISAYFS 97
Y + + S+ S+ + I + LL N +NS C+ + P F S L + Y+S
Sbjct: 408 YSVSGMKSNSSQVMEKILEFDLLLNNWYNSLPDCMQPRNRFKIPKFCSSNLILTSAIYYS 467
Query: 96 INFLKYEVSPIK-LCTSFKFFGTGNV 22
L + S K L + GTG++
Sbjct: 468 CLILIHRHSLTKNLQVNCVHRGTGSI 493
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,714
Number of Sequences: 5004
Number of extensions: 46318
Number of successful extensions: 189
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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