Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23i22
(630 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 105 3e-23
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 105 3e-23
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 105 3e-23
AC006748-6|AAF60516.1| 582|Caenorhabditis elegans Hypothetical ... 28 4.8
AC006748-5|AAX55685.1| 471|Caenorhabditis elegans Hypothetical ... 28 4.8
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z81114-1|CAB03285.1| 454|Caenorhabditis elegans Hypothetical pr... 27 8.4
AL117204-1|CAB55141.1| 328|Caenorhabditis elegans Hypothetical ... 27 8.4
AF002198-11|AAF99930.2| 311|Caenorhabditis elegans Hypothetical... 27 8.4
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 105 bits (251), Expect = 3e-23
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 7/209 (3%)
Frame = +2
Query: 5 KTNAIMTFPVPKNLKEVHSFIGLTSYFRKFIEKYALIAKPLSDLLK-KGXXXXXXXXXXX 181
KT+ + F P N+KE+ SF+GL Y+RKFI +A IA L+ L+ K
Sbjct: 1242 KTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIWEKEQEIA 1301
Query: 182 XXXLKSKLCNNPVLKIFDIHLETE------LHTDASMYGYAAILLQRDPNDNCMHPVHYM 343
LK +C PVL D+ + ++TDAS G A+L Q P D HP+ +
Sbjct: 1302 FQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGP-DGQQHPIAFA 1360
Query: 344 SRKTSDAQQKCSSYELEALAVIEGVKKFRRYLIGKPFKIVTDCEAFQKTLNKKDVSAKVA 523
S+ S A+ + +LEALA++ +++F+ + G + TD + L ++ ++
Sbjct: 1361 SKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSPLADRLW 1420
Query: 524 RWILYLQDFDFSIEHRTGDRMQHVDALSR 610
RW + + +FD I + G DALSR
Sbjct: 1421 RWSIEILEFDVKIVYLAGKANAVADALSR 1449
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 105 bits (251), Expect = 3e-23
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 7/209 (3%)
Frame = +2
Query: 5 KTNAIMTFPVPKNLKEVHSFIGLTSYFRKFIEKYALIAKPLSDLLK-KGXXXXXXXXXXX 181
KT+ + F P N+KE+ SF+GL Y+RKFI +A IA L+ L+ K
Sbjct: 1145 KTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIWEKEQEIA 1204
Query: 182 XXXLKSKLCNNPVLKIFDIHLETE------LHTDASMYGYAAILLQRDPNDNCMHPVHYM 343
LK +C PVL D+ + ++TDAS G A+L Q P D HP+ +
Sbjct: 1205 FQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGP-DGQQHPIAFA 1263
Query: 344 SRKTSDAQQKCSSYELEALAVIEGVKKFRRYLIGKPFKIVTDCEAFQKTLNKKDVSAKVA 523
S+ S A+ + +LEALA++ +++F+ + G + TD + L ++ ++
Sbjct: 1264 SKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSPLADRLW 1323
Query: 524 RWILYLQDFDFSIEHRTGDRMQHVDALSR 610
RW + + +FD I + G DALSR
Sbjct: 1324 RWSIEILEFDVKIVYLAGKANAVADALSR 1352
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 105 bits (251), Expect = 3e-23
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 7/209 (3%)
Frame = +2
Query: 5 KTNAIMTFPVPKNLKEVHSFIGLTSYFRKFIEKYALIAKPLSDLLK-KGXXXXXXXXXXX 181
KT+ + F P N+KE+ SF+GL Y+RKFI +A IA L+ L+ K
Sbjct: 1156 KTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIWEKEQEIA 1215
Query: 182 XXXLKSKLCNNPVLKIFDIHLETE------LHTDASMYGYAAILLQRDPNDNCMHPVHYM 343
LK +C PVL D+ + ++TDAS G A+L Q P D HP+ +
Sbjct: 1216 FQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGP-DGQQHPIAFA 1274
Query: 344 SRKTSDAQQKCSSYELEALAVIEGVKKFRRYLIGKPFKIVTDCEAFQKTLNKKDVSAKVA 523
S+ S A+ + +LEALA++ +++F+ + G + TD + L ++ ++
Sbjct: 1275 SKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSPLADRLW 1334
Query: 524 RWILYLQDFDFSIEHRTGDRMQHVDALSR 610
RW + + +FD I + G DALSR
Sbjct: 1335 RWSIEILEFDVKIVYLAGKANAVADALSR 1363
>AC006748-6|AAF60516.1| 582|Caenorhabditis elegans Hypothetical
protein Y39A3B.5a protein.
Length = 582
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = -1
Query: 192 NSSKACLSASSNLNSPFFNKSLSGLAISAYFSINFLKYEVSPIKLCTSFKFFGTGNVIIA 13
N+ A N+ F + +F IN+ K SP+ + +++ FFG +I+
Sbjct: 478 NAVYATFGRKKNMRHHFQKVYFDIFELLIFFKINYQKSIKSPVSVFSNYLFFGFSAPLIS 537
Query: 12 FVLS 1
LS
Sbjct: 538 VNLS 541
>AC006748-5|AAX55685.1| 471|Caenorhabditis elegans Hypothetical
protein Y39A3B.5c protein.
Length = 471
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = -1
Query: 192 NSSKACLSASSNLNSPFFNKSLSGLAISAYFSINFLKYEVSPIKLCTSFKFFGTGNVIIA 13
N+ A N+ F + +F IN+ K SP+ + +++ FFG +I+
Sbjct: 367 NAVYATFGRKKNMRHHFQKVYFDIFELLIFFKINYQKSIKSPVSVFSNYLFFGFSAPLIS 426
Query: 12 FVLS 1
LS
Sbjct: 427 VNLS 430
>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
protein F59A6.5 protein.
Length = 1286
Score = 27.9 bits (59), Expect = 6.3
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +2
Query: 365 QQKCSSYELEALAVIEGVKKFRRYLIGKPFKIVTDCEAFQKTLN--KKDVSAKVARWILY 538
Q KCS+ E+E + E +++ + + T+ E+ + L+ +K++SAK +
Sbjct: 120 QNKCSTLEMEKQTLQETIQRAQ----DDKKETETELESSRSRLHVLEKELSAKANDIFMV 175
Query: 539 LQDFDFSIEHRTGDRMQHVDALS 607
+D E T RM++V LS
Sbjct: 176 TKDLHDKNEELTSFRMEYVTKLS 198
>Z81114-1|CAB03285.1| 454|Caenorhabditis elegans Hypothetical
protein T04D3.1 protein.
Length = 454
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +2
Query: 374 CSSYELEALAVIEGVKKFRRYLIGKP---FKIVTDCEAFQKTLNKKDVSAKVARWILYLQ 544
C +++ L +I + +Y+ + F+I+ DCE T + D+ K A + +Q
Sbjct: 208 CQDFQMYVLYIITSRGHYEKYIYNQSTSQFEIL-DCEKCPDTTREVDLLPKYAEFCEEIQ 266
Query: 545 DFDFSIEHRTGDRMQ 589
+ + + DRM+
Sbjct: 267 AYVIHVFNSFTDRME 281
>AL117204-1|CAB55141.1| 328|Caenorhabditis elegans Hypothetical
protein Y116A8C.1 protein.
Length = 328
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = +1
Query: 10 KCYYDVSCTKEFERST--QLYR--TNFVFQKI 93
KCYYDV+C F S ++Y+ T F QKI
Sbjct: 52 KCYYDVTCVVIFRTSAGCKIYKIGTPFSVQKI 83
>AF002198-11|AAF99930.2| 311|Caenorhabditis elegans Hypothetical
protein F35F10.1 protein.
Length = 311
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 386 ELEALAVIEGVKKFRRY-LIGKPFKIVTDCEAFQKTLNKKDVSAKVARWILYLQDFDFSI 562
E E L V G+K F+ L G+ K T+C F++ + K ++V +L+LQ +F+I
Sbjct: 197 ESETLTV--GIKLFKNIQLFGRDEKC-TECGEFERGFSVKAFWSEVQLVLLHLQPSEFAI 253
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,047,456
Number of Sequences: 27780
Number of extensions: 254259
Number of successful extensions: 763
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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