Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23i16
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   1.9  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   4.4  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    24   5.9  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 70  FLYFENIYRMGFFFSIVKTSI-IFGAGVYTGV 162
           FL F+N+  + F F ++  SI IFG  V  G+
Sbjct: 106 FLQFQNVANLFFLFLVILQSISIFGEQVNPGL 137


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 160 VYVAQNYQIEKVE-DPKALFEKAQAFVKSKLSEVQDG 267
           ++ AQ   +++V+ D   +FEK QA+V    +  Q+G
Sbjct: 721 IHKAQGQTLDRVKVDLGRVFEKGQAYVALSRATTQEG 757


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 15/65 (23%), Positives = 32/65 (49%)
 Frame = +1

Query: 70  FLYFENIYRMGFFFSIVKTSIIFGAGVYTGVYVAQNYQIEKVEDPKALFEKAQAFVKSKL 249
           F++F+++         V   ++    VY G +V++  +  KVE  KA F     ++K+  
Sbjct: 212 FVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANF--TNVYIKNLD 269

Query: 250 SEVQD 264
           +E+ +
Sbjct: 270 TEITE 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,154,618
Number of Sequences: 5004
Number of extensions: 18525
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)