Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23i12
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 33 0.027
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 31 0.19
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 29 0.44
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 29 0.44
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.59
SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like factor|Schizosacchar... 28 1.0
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 28 1.0
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 1.8
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 4.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 4.1
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 26 4.1
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 4.1
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 4.1
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun... 26 5.5
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 5.5
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 5.5
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo... 25 9.5
SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ... 25 9.5
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 25 9.5
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 33.5 bits (73), Expect = 0.027
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 247 VEYQLIQLKNKLQKSELHFANDSEQAKLNDASENTHGYKTIIQTDNDCVTKK-EEKILEC 423
+E+QL LKN L++ EL F + EQ +L H K +Q V K+ EE+
Sbjct: 60 LEFQLENLKNDLKRKELEF--EREQIELQRKLAEEHEQKNSLQLRLTLVEKQLEEQSTSY 117
Query: 424 LMENDEINNSLDS 462
E +E+ N ++
Sbjct: 118 QKEIEEVRNEKEA 130
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 30.7 bits (66), Expect = 0.19
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 8/161 (4%)
Frame = +1
Query: 154 VERNDGLPQNICEECFTKINGILKFRE-ACKIVEYQLIQLKNKLQKSEL----HFANDSE 318
V+RND I K N +LK + A K + KL++S+ +F
Sbjct: 8 VQRNDVQKYPITRFVKRKSNVVLKKNKGAMKSNSNSRSRGNKKLKESQFSSRDNFRTTQT 67
Query: 319 QAKLN-DASENTHGYKTIIQTDNDCVTKKEEKILECLMENDEINNSLDSENSITNTFETA 495
QA + + S+NT+ ++ DN+ K+E + ++ D ++S++ EN I+ T
Sbjct: 68 QASSSSEPSDNTNRLVPVVIIDNNTPKKEESNAEKLKLDKD--SSSVNYENQISKPLITF 125
Query: 496 VHILGTNKPNASFESSDELFKANDV--NNRVTCKLCQKDLS 612
I T N F D+ N+V N+ +C +D++
Sbjct: 126 SDIHET--VNVPFLCLDKHDSKNEVAINSHEDSPVCLEDIT 164
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 29.5 bits (63), Expect = 0.44
Identities = 30/109 (27%), Positives = 47/109 (43%)
Frame = +1
Query: 85 FQKFHINLSLKKIRTNGFFYWIKVERNDGLPQNICEECFTKINGILKFREACKIVEYQLI 264
F+ I SL+ I N + + E + L + + C T G+ + + + L+
Sbjct: 379 FENTDILQSLRMICGNLYVHGETQELDHFLGEFSNQWCRTNPKGLFCNPQIVHSIAFSLL 438
Query: 265 QLKNKLQKSELHFANDSEQAKLNDASENTHGYKTIIQTDNDCVTKKEEK 411
L L +EL + SE+ N ENT Y++I Q ND EEK
Sbjct: 439 LLNTDLHIAEL---SASERMSRNQFVENT--YRSIKQALNDSFDGNEEK 482
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 29.5 bits (63), Expect = 0.44
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +1
Query: 286 KSELHFANDSEQAKLNDASENTHGYKTIIQTDNDCVTKKEEKILECLMENDEINNSLDSE 465
K + FAN + L A E K ++ +++KEE+ E ++ +++ NS
Sbjct: 1061 KKQKEFANQYDSTLLAQAQEKLEKLKVEVERRRRLLSEKEERRKELAIKIEQVTNSCSDL 1120
Query: 466 NSITN 480
TN
Sbjct: 1121 ELRTN 1125
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.1 bits (62), Expect = 0.59
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 247 VEYQLIQLKNKLQKSELHFANDSEQAKLNDASENTHGYKTIIQTDNDCVTKKEEKILEC 423
V+ + +L +L K +LH A + + +N+ K+ + ND +TK + +I EC
Sbjct: 338 VDLETPKLVEELTK-QLHVAESTLKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDEC 395
>SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like
factor|Schizosaccharomyces pombe|chr 3|||Manual
Length = 203
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 409 KILECLMENDEINNSLDSENSITN---TFETAVHILGTNKPNASFESSDELFKAND 567
++ C ++I N +SE + TFET V +L N S ES +L +ND
Sbjct: 36 RVWSCTCSRNQIVNQAESERCPIDPFQTFETLVDVLAEVLVNVSSESRIQLRGSND 91
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 28.3 bits (60), Expect = 1.0
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = -2
Query: 213 INFCETFLTYVLG*PIISFYLNPVEKSISSYFFQ*KIYMKFLENIWEYLNVSSLKLLFTE 34
IN L +++ I+F+L+ VEKSIS +Y F E+I L SLK L E
Sbjct: 255 INLKAIPLFFIICADSINFHLSSVEKSISQQKASELMYKLFSEHIAFLL---SLKNLPEE 311
Query: 33 ILLNCV 16
L+C+
Sbjct: 312 ATLDCM 317
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 153 LNPVEKSISSYFFQ*KIYMKFLENIWEYLNVSSLKLLFTE 34
LN V S +Y +IY + +I+ ++NV + LF +
Sbjct: 1293 LNKVHDSCQAYKVNYEIYNALIRSIYRFINVEAFNSLFID 1332
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 295 LHFANDSEQAKLNDASENTHGYKTIIQTDNDCVTKKEEKILECLMENDEI 444
L A D+E L+ A + KTI+ TD V +++E L+ N+E+
Sbjct: 410 LALATDTENVTLSTAKAHLTRLKTIVSTDASLV-----ELIEVLIFNEEL 454
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 241 KIVEYQLIQLKNKLQKSELHFANDSEQAKLNDASENTHGYKTII 372
K++EYQL Q + L S H A+ + S + GY++I+
Sbjct: 1229 KLLEYQLDQTEVYLDLSGTHAASPRSSMTVKPLSLCSSGYESIV 1272
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 4.1
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = +1
Query: 397 KKEEKILECLMENDEINNSLDSENSITNTFETAVHILGTNKPNASFESSDELFKANDVNN 576
+KE +IL +N + ++ S+N+IT T G NK N ND+ N
Sbjct: 452 RKEIQILRHTSQNGDQESNESSKNAIT----TKTTDKGNNKENTMLNDGSTAPAKNDIRN 507
Query: 577 RVTCKLCQKDLSIRS 621
+ LS S
Sbjct: 508 VINTNNLDAKLSDES 522
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = -3
Query: 614 MDRSF*HSLQVTRLLTSFALNSSSELSKLAFGLFVPKMCTAVSNVFVMEFSESKLLFISS 435
++RS L TR + ++ + + L+ L+VP++ + + VME+ + S
Sbjct: 286 IERSLPQELDFTREAKN-SIETKEHFAHLSTSLYVPEVMWSKPRILVMEYVAGARIDNLS 344
Query: 434 FSIKHS 417
F +HS
Sbjct: 345 FMDEHS 350
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 292 ELHFANDSEQAKLNDASENTHGYKTIIQTDNDCVTKKEEKILECLMENDEINNSLDSENS 471
ELH + S++A +ND E+ I+ T V K + L N SLD E++
Sbjct: 10 ELHRMDSSDEASINDDQED------ILDTPRTRVRKMLASVDMQLSSNAVSEASLDKEST 63
Query: 472 ITN 480
+ N
Sbjct: 64 VGN 66
>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 113
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +1
Query: 205 KINGILKFREACKIVEYQLIQLKNKLQKSELHFANDSEQAKLNDASENTHGYKTIIQTDN 384
K++ +L+ AC+ +Y I +K+ + EL +N +DAS + T+ ++D
Sbjct: 20 KVDRVLRL--ACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTD----PTLPRSDK 73
Query: 385 DC 390
+C
Sbjct: 74 EC 75
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 439 EINNSLDSENSITNTFETAVHILGTNKPNASFESSDELFKANDV---NNRVTCKLCQKDL 609
E+ + ++N + + +ILG KP+ F+S+ +L + V R K CQ +
Sbjct: 243 EVKGRVCTQNEYKSDPKNQYNILGAPKPHVFFDSNSQLVVDSRVAGSKARFARKGCQSNS 302
Query: 610 SIRSV 624
+ SV
Sbjct: 303 VVSSV 307
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = +1
Query: 385 DCVTKKEEKILECLMENDEINNSLDSENSITN--TFETAVHILGTNKPNASFESSDELFK 558
D +++K +LE L N+ NN+ + ++ N TF T + P S + K
Sbjct: 306 DILSQKISSVLEVLSNNNNSNNNNGNNGTVPNAKTFFTPPSSITQQVPFPSTIIPESTVK 365
Query: 559 ANDVNNRVTCKLCQKD 606
N V L D
Sbjct: 366 ENSTRPYVNSHLVAND 381
>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 185
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 3 VLLFLRNLIEFQ*TVTSEKKHLDIPKYFPKISYKS 107
VL FL +I FQ + + LD P Y Y+S
Sbjct: 20 VLFFLCAVITFQGVIQRREVELDTPVYVHYAKYRS 54
>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 220 LKFREACKIVEYQLIQLKNKLQKSELHFANDSE 318
LK R AC+ + LKN +Q+ H+ + E
Sbjct: 194 LKLRGACRTCSSSAVTLKNGIQQMLKHYIPEVE 226
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 25.0 bits (52), Expect = 9.5
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Frame = +1
Query: 211 NGILKFREACKIVEYQLIQLKNKLQKSE--LHFANDSEQAKLN---------DASENTHG 357
N I+ + ++ QL+QL+ + SE ++ KLN + +ENT
Sbjct: 99 NEIMSLESQLQKMKEQLLQLEERENTSEDICQSEENANMLKLNFYHSLGFDLETAENTGN 158
Query: 358 YKTIIQTDNDCVT 396
+ II T+ND T
Sbjct: 159 KRVIIHTENDLQT 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,056
Number of Sequences: 5004
Number of extensions: 57330
Number of successful extensions: 203
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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