Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23i12
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 33 0.15
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522... 30 1.4
03_02_0492 - 8861472-8861517,8862672-8862781,8862889-8863059,886... 30 1.9
09_03_0171 - 13062794-13064017 29 3.2
02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993... 29 3.2
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 4.3
01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511 29 4.3
02_04_0375 - 22464814-22465577,22466930-22466950,22467036-22467213 28 5.6
01_01_0473 - 3478660-3480338,3480507-3480609 28 5.6
05_07_0110 - 27747789-27747897,27748375-27748568,27748811-277488... 28 7.5
02_05_0701 + 31022485-31022648,31023569-31023611,31023712-310237... 28 7.5
04_03_0644 + 18337757-18337947,18339113-18339344 27 9.9
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 187 CEECFTKINGILKFREACKIVEYQLIQLKNKLQKSEL-HFANDSEQAKL 330
C CFT I L REACK VE +L +KL K L + A S +KL
Sbjct: 97 CLTCFTIIYYQLAMREACKYVEEKLAVKVDKLGKDSLINCAKTSMSSKL 145
>05_06_0273 -
26851077-26851167,26851433-26851869,26852125-26852271,
26852352-26854415,26854792-26854908,26855007-26855093,
26855350-26855439,26855523-26855609,26856736-26856810
Length = 1064
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +1
Query: 169 GLPQNICEECFTKI----NGILKFREACKIVEYQLIQLKNKLQKSEL 297
G P +C+ CF K+ G++ ++ + I +K+KL++ E+
Sbjct: 671 GKPHRVCDSCFMKLKAADTGVISSYNKRNVITRRSIDIKDKLERPEI 717
>03_02_0492 -
8861472-8861517,8862672-8862781,8862889-8863059,
8863158-8863262,8863342-8863431,8863719-8863813,
8863933-8864101,8864193-8864345,8864562-8864639,
8864883-8864957,8865076-8865098,8865181-8865268,
8865397-8865432
Length = 412
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +1
Query: 310 DSEQAKLNDASENTHGYKTIIQTDNDCVTKKEEKILECLMENDEINNSLD----SENSIT 477
DS+ +++ E T Q + E ++ +CL +N+E+ + L+ + ++
Sbjct: 271 DSQSSEIEKLFEENSALSTSYQEAVAVTMQWENQVKDCLKQNEELRSHLEKLRLEQATLL 330
Query: 478 NTFETAVHILGTNKPNASF 534
T T + G N+ + SF
Sbjct: 331 KTSNTTIQPDGQNETSISF 349
>09_03_0171 - 13062794-13064017
Length = 407
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +1
Query: 244 IVEYQLIQLKNKLQKSELHFANDSEQAKLNDASENTHGYKTIIQTDNDCVTKKEEKILEC 423
+V Y++I +K + + D E+ +L+ EN+H + +DC E+ C
Sbjct: 29 LVAYRIIDTDDKGNTDDEYCPIDDEEEELDHGDENSHDEDIVDNDKDDCDLGDEDDNHTC 88
Query: 424 LMEND 438
+ D
Sbjct: 89 ERDYD 93
>02_01_0015 -
98311-98412,98635-98707,98830-98921,99139-99230,
99363-99432,99683-99781,100008-100093,100541-100655,
100853-100918,101064-101143,101226-101301,101915-102151,
102559-102590,102993-103047,103384-103498,104497-104579,
105182-105232,105740-105802,105945-106010,106144-106279,
106503-106591,106844-106964,107138-107340,107434-107820
Length = 862
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +1
Query: 418 ECLMENDEINNSLD--SENSITNTFETAVHILGTNKPNASFESSDELFKANDVNN-RVTC 588
+C++ ++ S D SENS+ N T + G + + L ++N +NN +
Sbjct: 270 QCIITIRAVHKSSDAESENSLNNAVLTIADLAGAERERRTGNQGTRLLESNFINNTSMVF 329
Query: 589 KLCQKDL 609
LC + L
Sbjct: 330 GLCLRSL 336
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 145 WIKVERNDGL-PQNICEECFTKINGILKFREACKIVEYQLIQLKNK 279
++K R GL P N E +KING+ K AC +V + Q+ +
Sbjct: 259 YLKARRKYGLAPVNAESEKKSKINGLKKSDSACIVVPTMVFQISEE 304
>01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511
Length = 383
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 502 CVLRFQTYLLWNFQSLSYCLFH 437
CV R Q + LW+ + L Y LFH
Sbjct: 344 CVKRLQRHFLWHARPLRYDLFH 365
>02_04_0375 - 22464814-22465577,22466930-22466950,22467036-22467213
Length = 320
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 286 KSELHFANDSEQAKLNDASENTHGYKTIIQTDNDCVTKKEEKILECLMENDEINNSLD-S 462
+ ++N S ++++ + + K +IQ + K++E I+E + ++ NSL+
Sbjct: 121 RKPFQYSNSSGSPCVSESGSDIYSKKEVIQKLRQHLKKRDEMIMEMQAQIADLKNSLNIQ 180
Query: 463 ENSITN 480
E TN
Sbjct: 181 ETHSTN 186
>01_01_0473 - 3478660-3480338,3480507-3480609
Length = 593
Score = 28.3 bits (60), Expect = 5.6
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Frame = +1
Query: 217 ILKFREACKIVEYQLIQL-KNKLQKSELHFANDSEQAKLNDASENTHGYKTIIQT----- 378
I+K ++ K E L ++ + KLQ + L+D+S + II+
Sbjct: 276 IIKLQDIVKNFEGDLAKMSQEKLQLKAQVKELEQASRSLDDSSAQIMKLQEIIKDLQRRL 335
Query: 379 DNDCVTKKEEKILECLMENDEINNSLDSENSITNTFETAVHILGTNKPNASFESSDELFK 558
DND KK + E +E +++ L+ + + ++ L + A E S +
Sbjct: 336 DNDSNEKK--MLEERAIEFEQVRKELEGSRTEVAELQATINNLKADLGRALEEKSQLESR 393
Query: 559 ANDVNNRVTCKL 594
ND+ + + C L
Sbjct: 394 INDLEHTIACNL 405
>05_07_0110 -
27747789-27747897,27748375-27748568,27748811-27748888,
27749925-27750064,27750197-27750269
Length = 197
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/66 (24%), Positives = 27/66 (40%)
Frame = +1
Query: 454 LDSENSITNTFETAVHILGTNKPNASFESSDELFKANDVNNRVTCKLCQKDLSIRSVDAH 633
+DSE+ I+ A +A +E+ +V C C +D + S+ AH
Sbjct: 1 MDSEHWISR-LAAAKRFYAAQLGHADRAGMEEVDMDEEVRPEFACPYCYEDHDVVSLCAH 59
Query: 634 MARRHP 651
+ HP
Sbjct: 60 LEEEHP 65
>02_05_0701 +
31022485-31022648,31023569-31023611,31023712-31023777,
31024007-31024062,31024091-31024190,31024290-31024472,
31024953-31025001,31025089-31025169,31025209-31025268,
31025394-31025514,31025612-31025693,31025783-31025868,
31026011-31026111,31026246-31026387,31026488-31026638,
31026710-31026937
Length = 570
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 578 VSPASCVRRTCPFAVWMPIWLG 643
V SC RRTC A + +WLG
Sbjct: 547 VEAVSCRRRTCSMAGYCGLWLG 568
>04_03_0644 + 18337757-18337947,18339113-18339344
Length = 140
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 442 INNSLDSENSITNTFETAVHILG-TNKPNASFESSD-ELFKANDVNNRVTCKLCQKDLSI 615
INN LDS + + + +LG TN P E+ D E+ D N T L Q LSI
Sbjct: 58 INNCLDSSSDVEEEYSLVAKLLGETNDP--EMENDDGEILGVIDTTNYKTI-LVQHVLSI 114
Query: 616 R 618
+
Sbjct: 115 Q 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,709,526
Number of Sequences: 37544
Number of extensions: 291392
Number of successful extensions: 712
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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