Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23i11
         (245 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    34   0.003
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   0.60 
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    24   2.4  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    24   2.4  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    23   5.6  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    23   5.6  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    23   7.4  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    22   9.8  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    22   9.8  

>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 33.9 bits (74), Expect = 0.003
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
 Frame = +1

Query: 49  YYFEATVTD---EGLCRVGWSTQAAKLDL--GTDRLGYGF-GGTGKKSNC-KQFDDYGEA 207
           YY+E  +     EG   VG+  ++ + +   G     +G+ G +G+K NC K  + YG  
Sbjct: 114 YYYEIQILSRGKEGKMGVGFCRKSMQTNRLPGCTAESWGYHGNSGEKFNCSKTGEAYGPE 173

Query: 208 YGMNDVIGCFLN 243
           +   D+IGC +N
Sbjct: 174 FTTGDIIGCGVN 185


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 108 LCRPADTA*ALISDSGFKVICTFRMNTFGCP 16
           L  P DTA  +  D   + + T  +NTF CP
Sbjct: 705 LLGPTDTAVFVKPDLSLEKLPTLEINTFNCP 735


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 181 KQFDDYGEAYGMNDVIG 231
           K F D G++YG+ND  G
Sbjct: 4   KNFFDEGKSYGVNDYAG 20


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 172 SNCKQFDDYGEAYGMNDV 225
           +N K  DDYGE   ++DV
Sbjct: 371 TNIKNLDDYGEGNRLDDV 388


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 20  QPKVFIRKVHITLKPLSLMRAYAVSA 97
           +PK+F RK +++L        YA+SA
Sbjct: 487 KPKLFFRKFNLSLFDKQKYANYAISA 512


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 85  ISPHQ*QWLQSNMHLSYEHLWLPY 14
           +SPHQ  W   N   +   LW PY
Sbjct: 349 LSPHQASWNIYNSFDNSMVLWCPY 372


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 116 FAACVDQPTRHKPSSVTVASK*YAPFV*TPL 24
           FA+   Q   H+PSS   A      +V TPL
Sbjct: 182 FASAQTQGQEHRPSSPNPAEHMTGAYVNTPL 212


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 64  TVTDEGLCRVGWSTQA 111
           T++D GL  VGW   A
Sbjct: 313 TLSDRGLLAVGWGPHA 328


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 5   GTGVGQPKVFIRKVHITLKPLSLMRAYAVSAG 100
           GTG       I  +H+T  PL+  R     AG
Sbjct: 275 GTGAVALAAIIGALHVTKSPLTEQRIMIFGAG 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,047,994
Number of Sequences: 5004
Number of extensions: 18022
Number of successful extensions: 31
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)