Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23i11
(245 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839... 51 1e-07
12_01_0285 + 2120130-2121204,2122842-2123116 42 9e-05
11_01_0281 + 2086674-2087652,2089200-2089483 41 2e-04
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228... 37 0.002
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489... 30 0.30
11_01_0758 + 6362500-6363233,6363709-6365500 29 0.69
10_08_0338 + 16916429-16916650,16916728-16917900 28 1.2
11_06_0350 + 22573760-22575262 27 2.1
12_01_0241 - 1807379-1807418,1807579-1807625,1807800-1807892,180... 27 2.8
07_03_1439 - 26556398-26556418,26556700-26557743 27 2.8
11_03_0217 - 11828305-11828343,11828449-11828487,11828573-118288... 26 4.9
06_03_0784 - 24557089-24557198,24557296-24560725 26 4.9
06_01_0892 - 6827510-6827590,6829348-6830412 26 4.9
05_01_0428 - 3379116-3379262,3379357-3379537,3379690-3379785,337... 26 4.9
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 26 4.9
02_05_1194 - 34881450-34881593,34882023-34882220,34882522-348826... 25 6.4
08_02_1112 - 24382294-24382854 25 8.5
08_01_0024 + 180749-180872,181826-181880,181936-182025,182075-18... 25 8.5
>04_04_1285 -
32382614-32382720,32383032-32383710,32383816-32383926,
32384007-32384065,32384163-32384271,32384387-32384575,
32384650-32385476,32385501-32385633
Length = 737
Score = 50.8 bits (116), Expect = 1e-07
Identities = 35/91 (38%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Frame = +1
Query: 4 WHGCRATKGVHTKGAYYF------------EATVTDEG-LCRVGWSTQAAKLD-LGTDRL 141
W G RAT GV G Y F E T D+ LCRVG S + LG
Sbjct: 87 WSGARATVGVRGGGKYCFGCKVVAEQAVEMEDTAADQQHLCRVGVSRGGDPVGALGETGH 146
Query: 142 GYGFGGTGKKSNCKQFDDYGEAYGMNDVIGC 234
+GFGGTGK S+ +F +YG +G+ D + C
Sbjct: 147 SFGFGGTGKFSHQGKFVEYGVKFGVGDTVVC 177
>12_01_0285 + 2120130-2121204,2122842-2123116
Length = 449
Score = 41.5 bits (93), Expect = 9e-05
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Frame = +1
Query: 16 RATKGVHTKGAYYFEATVT---DEGLCRVGWSTQAAKL--DLGTDRLGYGFGG-TGKKSN 177
RAT+GV GA+YFE V G R+GW+T A + +G D G+G+ G K +
Sbjct: 203 RATRGV-AAGAWYFEVKVLHLGSTGHTRLGWATNNADIHAPVGYDVFGFGYRDMDGTKVH 261
Query: 178 CKQFDDYGE-AYGMNDVIGCFLN 243
+Y E YG DV+G +++
Sbjct: 262 KAWRANYAEQGYGDGDVLGFYIH 284
>11_01_0281 + 2086674-2087652,2089200-2089483
Length = 420
Score = 40.7 bits (91), Expect = 2e-04
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Frame = +1
Query: 16 RATKGVHTKGAYYFEATVT---DEGLCRVGWSTQAAKL--DLGTDRLGYGFGG-TGKKSN 177
RAT+GV GA+YFE V G R+GW+T A + +G D G+G+ G K +
Sbjct: 206 RATRGV-AAGAWYFEVKVLHLGSTGHTRLGWATNNADIHAPVGYDVFGFGYRDMDGTKVH 264
Query: 178 CKQFDDYG-EAYGMNDVIGCFLN 243
+Y + YG DV+G +++
Sbjct: 265 KAWRANYADQGYGEGDVLGFYIH 287
>07_03_1345 +
25919379-25920866,25921342-25921962,25922733-25922893,
25923284-25923422,25923509-25923592,25923944-25923982,
25924037-25924222,25924347-25924478,25924810-25925009,
25925294-25925498,25925618-25925944
Length = 1193
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +1
Query: 43 GAYYFEATVTDEGLCRVGWSTQAAKLD----LGTDRLGYGFGGTGKKSNCKQFDDYGEAY 210
G + +E T+ G+ ++GW+T + +G Y F G + YG+ +
Sbjct: 146 GKWMYEVTLETSGVQQLGWATLSCPFTDQKGVGDSDDSYAFDGRRVTKWNNDPEQYGQMW 205
Query: 211 GMNDVIGCFLN 243
+ DVIGC +N
Sbjct: 206 AVGDVIGCCIN 216
>06_03_1450 +
30246702-30247346,30248603-30248689,30248789-30248920,
30249016-30249162,30250375-30250440,30250519-30250629,
30251551-30251584,30251667-30251743,30251829-30251906
Length = 458
Score = 29.9 bits (64), Expect = 0.30
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 145 YGFGGTGKKSNCKQFDDYGEAYG 213
YG GT +SN FDDYG + G
Sbjct: 134 YGARGTAPRSNSPLFDDYGRSIG 156
>11_01_0758 + 6362500-6363233,6363709-6365500
Length = 841
Score = 28.7 bits (61), Expect = 0.69
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -2
Query: 193 HQIAYNLISCLYHQIHSLACQFQDPALPLV*TSRHGISPHQ*QWLQSNMHLSYEHL 26
H+ ++ + CL L FQ+ A+P + + G + H+ ++ NM EHL
Sbjct: 734 HRESFPALDCLKLSCSVLYLTFQEEAMPNLRRLKLGFNAHRREFFYVNMLSGIEHL 789
>10_08_0338 + 16916429-16916650,16916728-16917900
Length = 464
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 100 STQAAKLDLGTDRLGYGFGGTGKKSNCKQFDDYGEAYGMNDVIG 231
++QAA G GYG+GG G ++ YG G D G
Sbjct: 358 TSQAAGAGTGYGSQGYGYGGYGGDASYGNHGGYGGYGGRGDGAG 401
>11_06_0350 + 22573760-22575262
Length = 500
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 4 WHGCRATKGVHTKGAYYFEATVTDEGLCRVGWSTQAAKLDL 126
+H G K Y T+ D GLC++GW+ +A +L L
Sbjct: 100 FHVLEEMVGRGLKPNVYTHTTLID-GLCKIGWTERAFRLFL 139
>12_01_0241 -
1807379-1807418,1807579-1807625,1807800-1807892,
1808167-1808267,1808368-1808440,1808684-1808845,
1809003-1809034,1809399-1809471,1809713-1809768,
1809871-1810105
Length = 303
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 138 PVSSKIQLCRLCRPADTA 85
PVSS CR CRPA A
Sbjct: 5 PVSSTTSTCRPCRPAQAA 22
>07_03_1439 - 26556398-26556418,26556700-26557743
Length = 354
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 133 DRLGYGFGGTGKKSNCKQFDDYGEAYG 213
+R G GG G+K +Q+DD+ EAYG
Sbjct: 219 ERAWGGGGGGGEKP--QQYDDHDEAYG 243
>11_03_0217 -
11828305-11828343,11828449-11828487,11828573-11828861,
11828944-11829114,11829193-11830079,11830167-11830346,
11830692-11831399
Length = 770
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 181 YNLISCLYHQIHSLACQFQDPALPLV 104
Y+L+SC + Q H+L F DP + V
Sbjct: 590 YSLLSCQWCQKHALEVAFLDPQVVTV 615
>06_03_0784 - 24557089-24557198,24557296-24560725
Length = 1179
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Frame = -3
Query: 63 GFKVICTFRM----NTFGCPTPVPV 1
G K++ T RM NT GC TP P+
Sbjct: 328 GVKILVTTRMDIVANTLGCTTPFPL 352
>06_01_0892 - 6827510-6827590,6829348-6830412
Length = 381
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 94 GWSTQAAKLDLGTDRLGYGFGGTGKKSNCKQFDDYGEAYG 213
G+ QA + + G G+GG G+K ++ + YG YG
Sbjct: 127 GFRPQAEEENTYGSGYGSGYGGGGRKQ--QEEESYGSGYG 164
>05_01_0428 -
3379116-3379262,3379357-3379537,3379690-3379785,
3379886-3380034,3380120-3380392,3380895-3380983,
3381923-3382015,3382143-3382238,3382370-3382477,
3382917-3383208
Length = 507
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 64 WLQSNMHLSYEHLWLPY 14
WL SNMHL ++ +PY
Sbjct: 396 WLYSNMHLHKKYATMPY 412
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 25.8 bits (54), Expect = 4.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 73 DEGLCRVGWSTQAAKLDLGTDR 138
D+ +C VGW+ + L +GT++
Sbjct: 239 DDNVCSVGWAQRGTHLAVGTNQ 260
>02_05_1194 -
34881450-34881593,34882023-34882220,34882522-34882638,
34882753-34882908,34883192-34883341,34883418-34883527,
34883589-34883730,34883836-34884054,34887004-34887099,
34887187-34887489,34887575-34887624,34888003-34888114,
34888204-34888279,34888389-34888684,34888763-34888872,
34889071-34889120,34890439-34890488,34890636-34890816,
34890901-34890932
Length = 863
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +1
Query: 145 YGFGGTGKKSNCKQFDD---YGEAYGMNDVIGCFL 240
YG GTG S+ Q DD +G+ + D + FL
Sbjct: 511 YGADGTGLASSSNQMDDLEPFGDVGSLEDNVESFL 545
>08_02_1112 - 24382294-24382854
Length = 186
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 93 RLVYTSGKAGSWN*QARLWIWWY 161
R+VYT G++ QA+LW W Y
Sbjct: 138 RVVYTI--RGTFKVQAKLWFWHY 158
>08_01_0024 +
180749-180872,181826-181880,181936-182025,182075-182426,
182913-183000,183162-183294,183394-184089,184305-184368,
184489-184578
Length = 563
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 142 GYGFGGTGKKSNCKQFDDYGEAYGMNDVIGC 234
GY FGG S CK DY + + DV+ C
Sbjct: 42 GYFFGGD--VSICKSEQDYLRSSAVADVLSC 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,130,824
Number of Sequences: 37544
Number of extensions: 129582
Number of successful extensions: 273
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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