Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23i11
(245 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical... 116 3e-27
U53150-10|AAA96130.3| 433|Caenorhabditis elegans Hypothetical p... 102 4e-23
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 46 4e-06
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 46 4e-06
Z95559-15|CAB63361.1| 917|Caenorhabditis elegans Hypothetical p... 35 0.009
Z81505-1|CAB04122.1| 673|Caenorhabditis elegans Hypothetical pr... 31 0.082
U00058-2|AAL02528.2| 832|Caenorhabditis elegans Hypothetical pr... 31 0.11
AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ... 30 0.25
AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical ... 27 1.8
Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical p... 27 2.3
AL132862-13|CAB60543.1| 385|Caenorhabditis elegans Hypothetical... 27 2.3
Z81109-5|CAB03251.1| 588|Caenorhabditis elegans Hypothetical pr... 26 4.1
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 25 5.4
U40958-1|AAA81761.1| 165|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical pr... 25 9.4
AF106579-5|AAC78198.1| 174|Caenorhabditis elegans Hypothetical ... 25 9.4
>AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical
protein Y55F3BR.1 protein.
Length = 728
Score = 116 bits (278), Expect = 3e-27
Identities = 47/81 (58%), Positives = 62/81 (76%)
Frame = +1
Query: 1 DWHGCRATKGVHTKGAYYFEATVTDEGLCRVGWSTQAAKLDLGTDRLGYGFGGTGKKSNC 180
+WHG RAT G++ G YY+E TVT +GLCRVGW+T + L +GTD +G+GGTGKKS
Sbjct: 114 EWHGARATAGLYGNGKYYYEVTVTRDGLCRVGWATLSGSLKIGTDFESFGYGGTGKKSFG 173
Query: 181 KQFDDYGEAYGMNDVIGCFLN 243
K+FDDYG ++ NDV+GCFL+
Sbjct: 174 KKFDDYGTSFTTNDVLGCFLD 194
>U53150-10|AAA96130.3| 433|Caenorhabditis elegans Hypothetical
protein F20A1.9 protein.
Length = 433
Score = 102 bits (244), Expect = 4e-23
Identities = 41/80 (51%), Positives = 56/80 (70%)
Frame = +1
Query: 4 WHGCRATKGVHTKGAYYFEATVTDEGLCRVGWSTQAAKLDLGTDRLGYGFGGTGKKSNCK 183
W G R T G++ G YY+E T+T +GLCRVGW+T L++G +G+GGTG KS K
Sbjct: 37 WLGARGTAGLYGNGKYYYEVTITSKGLCRVGWATLGGSLNIGKGLDSFGYGGTGMKSTHK 96
Query: 184 QFDDYGEAYGMNDVIGCFLN 243
+FDDYG + +NDVIGC+L+
Sbjct: 97 KFDDYGLPFTLNDVIGCYLD 116
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 46.0 bits (104), Expect = 4e-06
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +1
Query: 43 GAYYFEATVTDEGLCRVGWST--QAAKLDLGTDRLGYGFGG-TGKKSNCKQFDDYGEAYG 213
G +YFE + G ++GW ++ LG D Y F G G+K + + + YG+ +
Sbjct: 970 GKWYFEFEILTAGYMKIGWMDIGSTPEIQLGADDRSYAFDGYLGRKWH-QGAETYGKEWK 1028
Query: 214 MNDVIGCFLN 243
+ DV+GCFL+
Sbjct: 1029 IGDVVGCFLD 1038
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 46.0 bits (104), Expect = 4e-06
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +1
Query: 43 GAYYFEATVTDEGLCRVGWST--QAAKLDLGTDRLGYGFGG-TGKKSNCKQFDDYGEAYG 213
G +YFE + G ++GW ++ LG D Y F G G+K + + + YG+ +
Sbjct: 1091 GKWYFEFEILTAGYMKIGWMDIGSTPEIQLGADDRSYAFDGYLGRKWH-QGAETYGKEWK 1149
Query: 214 MNDVIGCFLN 243
+ DV+GCFL+
Sbjct: 1150 IGDVVGCFLD 1159
>Z95559-15|CAB63361.1| 917|Caenorhabditis elegans Hypothetical
protein Y41E3.11 protein.
Length = 917
Score = 34.7 bits (76), Expect = 0.009
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 67 VTDEGLCRVGWS-TQAAKLDLGTDRLGYGFGGTGKKSNCKQFDDYGEAYGMNDVIGCFLN 243
+ D G R+G+S A L LG + +GK++ F D+G+ + + DV+ C +
Sbjct: 271 MADGGDVRIGFSLASTASLILGESPGSWCISASGKRAANNHFSDFGKLFDIGDVVTCIFD 330
>Z81505-1|CAB04122.1| 673|Caenorhabditis elegans Hypothetical
protein F16A11.1 protein.
Length = 673
Score = 31.5 bits (68), Expect = 0.082
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Frame = +1
Query: 43 GAYYFEATVTDEGLCRVGWSTQAAKLDLGTDRLGYGFGGTGKK---SNCKQFDDYG---- 201
G +Y+EATV G+ ++G +T+ ++ + GYG G C+Q Y
Sbjct: 393 GVWYYEATVLTSGVMQIGLATKRSRF---LNHEGYGIGDDASSVAYDGCRQLVWYNAKSH 449
Query: 202 ----EAYGMNDVIGCFLN 243
E + DVIG LN
Sbjct: 450 KHEHENWQPGDVIGVLLN 467
>U00058-2|AAL02528.2| 832|Caenorhabditis elegans Hypothetical
protein W03A5.1 protein.
Length = 832
Score = 31.1 bits (67), Expect = 0.11
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 103 TQAAKLDLGTDRLGYGFGGTGKKSNCKQFDDYGEAYGMNDVIGC 234
T LD DRLGY G + + FD + EA G + +I C
Sbjct: 74 TMIEMLDRLGDRLGYDIDGRDSLDDDELFDTFKEASGFSPIIYC 117
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 115 KLDLGTDRLGYGFGGTGKK 171
K+D GTD++G G GT KK
Sbjct: 521 KIDCGTDQIGKGAFGTVKK 539
>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
protein C33E10.6 protein.
Length = 1014
Score = 29.9 bits (64), Expect = 0.25
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 166 KKSNCKQFDDYGEAYGMNDVI 228
KK NCK DY + Y +NDV+
Sbjct: 505 KKMNCKNIGDYTDIYMLNDVL 525
>AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical
protein Y54E5A.7 protein.
Length = 622
Score = 27.1 bits (57), Expect = 1.8
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Frame = +1
Query: 43 GAYYFEATVTD--EGLCRVGWSTQAAKLDL--GTDRLGYGF-GGTGKKSNCKQFDD-YGE 204
G YYFE + + G +G S + L+ G D +G+ G G YG
Sbjct: 94 GVYYFEVRILEGHSGCMGIGLSKKDCDLNRMPGWDPGCFGYHGDDGNFFLASGVGQAYGP 153
Query: 205 AYGMNDVIGC 234
+G DVIGC
Sbjct: 154 KFGPGDVIGC 163
>Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK856.13 protein.
Length = 1037
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -2
Query: 208 KPRHNHQIAYNLISCLYHQI--HSLACQF 128
K H H IAY I+ +Y Q+ H A QF
Sbjct: 280 KQDHKHAIAYQQIATVYEQLGDHQKALQF 308
>AL132862-13|CAB60543.1| 385|Caenorhabditis elegans Hypothetical
protein Y73F8A.18 protein.
Length = 385
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 75 ISDSGFKVICTFRMNTFGCP 16
IS +GF VI ++MNT G P
Sbjct: 131 ISCAGFLVISNYKMNTLGVP 150
>Z81109-5|CAB03251.1| 588|Caenorhabditis elegans Hypothetical
protein R10D12.8 protein.
Length = 588
Score = 25.8 bits (54), Expect = 4.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 43 GAYYFEATVTDEGLCRVGWSTQAAKLDLGTDRLGYGFGGTGKKS 174
GAYY E TDE L ++ + A KL G GF G K+
Sbjct: 230 GAYYHEWNFTDEKLSKL--NLHATKLGFYGFMEGLGFDGNIHKN 271
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 169 KSNCKQFDDYGEAYGMNDVI 228
++ CK DY E Y +NDV+
Sbjct: 895 ETKCKNLKDYTEIYMINDVL 914
>U40958-1|AAA81761.1| 165|Caenorhabditis elegans Hypothetical
protein F09F9.2 protein.
Length = 165
Score = 25.0 bits (52), Expect = 7.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 175 NCKQFDDYGEAYGMNDV 225
+CKQ + Y + YG+ DV
Sbjct: 114 HCKQVEHYSKTYGVKDV 130
>Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 142 GYGFGGTGKKSNCKQFDDYGEAYGMND 222
G+ +KSN ++YG ++G ND
Sbjct: 231 GWNNNNNNRKSNNNNNNNYGNSWGTND 257
>Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 142 GYGFGGTGKKSNCKQFDDYGEAYGMND 222
G+ +KSN ++YG ++G ND
Sbjct: 231 GWNNNNNNRKSNNNNNNNYGNSWGTND 257
>AF106579-5|AAC78198.1| 174|Caenorhabditis elegans Hypothetical
protein F54E2.2 protein.
Length = 174
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 181 YNLISCLYHQIHSLACQFQDPALPL 107
Y+LISC HQ+H Q++ P L L
Sbjct: 12 YSLISCYQHQLH----QYKIPRLHL 32
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,843,854
Number of Sequences: 27780
Number of extensions: 103565
Number of successful extensions: 247
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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