Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23i06
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    89   6e-19
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    28   1.3  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    27   1.7  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    26   3.8  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    26   3.8  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   6.7  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   8.9  

>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 88.6 bits (210), Expect = 6e-19
 Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
 Frame = +1

Query: 271 WVLSYLLVCGAVYRRYARKLPTRIRGALGAKRVLIVIAHPDDECMFFGPTIFRLCEQ-GT 447
           W  S LLV        A +  +  +  L  + +L V AHPDDE MFFGPTI  L  Q  T
Sbjct: 3   WFWSTLLVTAIAVLSTANESSSG-QEKLAVESILFVFAHPDDESMFFGPTIDYLGNQHST 61

Query: 448 DVHILCLSNGNFEGKGQVRRKELWSACQELGVPVENICLINDXRLQDSPKVQW 606
            VH+LCLSNGN +G G VR KEL  A  +  +   N+ +++D +LQD  + +W
Sbjct: 62  RVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKW 114


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 151 YLEMLLSILGYDWEYLYNIYLQILSEVLVYVKNFAL 258
           YLEML  +   +W Y  NIY+ IL    +  K  AL
Sbjct: 450 YLEMLAWLCRRNWVYEQNIYMYILVPEEIKKKAIAL 485


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -3

Query: 310 DIQHHILVNNLTPMHKCTMQNFSHKLKLLTKFASKYYTNIPNRIPILTIT 161
           DIQ  IL N    +   +  N + K+ + T   S   ++IP  I ++T T
Sbjct: 53  DIQQEILKNGQVRVETYSSSNTARKIFICTSSVSNLASSIPALIKVVTPT 102


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 430 LCEQGTDVHILCLSNGNFEGKGQVRRKE-LWSACQELGVPVENI 558
           L E+  D HILC+   N  G G V   + L   C   G  V +I
Sbjct: 24  LDEKNPDAHILCILKANAYGHGAVEVAQFLAKYCSAEGFGVASI 67


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 417 WSEKHAFIIWVCDNYEHSLRSECSANSCRKLSSV 316
           W   H F++ +C+  +  L+ +  A SC K  SV
Sbjct: 117 WVLPHQFVVRICNQLKGCLKKDAVAISCIKGVSV 150


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 309 STVRSKASDKNSRSTRSEESAHSYRTP 389
           +T+R+++ +  S+S  S E  HS RTP
Sbjct: 476 ATLRNESFNAASQSNLSSEHGHSSRTP 502


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 491 LPSKLPFDKHSICTSV 444
           LP +LP DK  ICT +
Sbjct: 133 LPEELPADKSQICTDI 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,288
Number of Sequences: 5004
Number of extensions: 49010
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)