Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23i06
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1599 + 34700250-34700437,34700799-34700869,34701029-347010... 89 3e-18
03_05_0705 - 26965352-26965542,26965732-26965763,26966141-269662... 32 0.32
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 29 4.0
05_03_0284 + 11599390-11600007,11600109-11600153,11600343-116005... 28 5.2
06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980... 27 9.2
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 27 9.2
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910... 27 9.2
03_06_0395 + 33616304-33616494,33616863-33617095,33617213-336173... 27 9.2
>04_04_1599 +
34700250-34700437,34700799-34700869,34701029-34701093,
34701193-34701273,34701328-34701408,34701632-34701651,
34701795-34701867
Length = 192
Score = 88.6 bits (210), Expect = 3e-18
Identities = 39/81 (48%), Positives = 55/81 (67%)
Frame = +1
Query: 343 RGALGAKRVLIVIAHPDDECMFFGPTIFRLCEQGTDVHILCLSNGNFEGKGQVRRKELWS 522
RG ++ VL+V+AHPDDE MFF PTI L +G +HILCLS GN +G G +R++EL+
Sbjct: 43 RGDRMSRNVLLVLAHPDDESMFFAPTILFLKSKGHSIHILCLSQGNADGLGNIRKEELYL 102
Query: 523 ACQELGVPVENICLINDXRLQ 585
AC L +P E + +++ LQ
Sbjct: 103 ACVTLKIPAEQVKVLDHSELQ 123
>03_05_0705 -
26965352-26965542,26965732-26965763,26966141-26966235,
26966737-26966810,26966894-26967029,26967137-26967200,
26967285-26967350,26967445-26967587,26969314-26969407,
26969779-26969902,26970016-26970193,26970273-26970395,
26970884-26970955,26971032-26971139,26972511-26972627,
26972757-26972889,26973209-26973299,26974642-26974722,
26975342-26975421,26975500-26975705,26977417-26977893
Length = 894
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/79 (27%), Positives = 31/79 (39%)
Frame = +1
Query: 343 RGALGAKRVLIVIAHPDDECMFFGPTIFRLCEQGTDVHILCLSNGNFEGKGQVRRKELWS 522
+G +G + L+VI PD F I RLCE V C N + Q E W
Sbjct: 532 QGVIGQQLELLVIVLPDANATVFYGRIKRLCETELGVITQCCLARNVQNVRQHNISETWH 591
Query: 523 ACQELGVPVENICLINDXR 579
L + ++ +I R
Sbjct: 592 LKSMLRIINRSVYVIRQLR 610
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -2
Query: 428 LKIVGPKNMHSSSGCAITMSTLFAPSAPRILVGSFRAYR 312
L +V PKN S G A +MST APS+ V R +R
Sbjct: 176 LGVVSPKNSLSILGAAPSMSTAAAPSSASTGVALNRPHR 214
>05_03_0284 +
11599390-11600007,11600109-11600153,11600343-11600550,
11600645-11600726,11601894-11602398
Length = 485
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 427 RLCEQGTDVHILCLSNGNFEGKGQVRRKELWSACQELGVPVENICL 564
R Q T VH+ +S N G VR + AC + VP NI +
Sbjct: 388 RCMNQSTAVHVTDVSYANVRGSYDVRAAPIHFACSDT-VPCTNITM 432
>06_03_1274 +
28897491-28897707,28897804-28897935,28898029-28898096,
28898216-28898280,28898468-28898534,28898630-28898917,
28898995-28899102,28899236-28899487,28899918-28899997,
28900092-28900185,28900728-28900810,28901319-28901873,
28902085-28902616
Length = 846
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +1
Query: 394 DECMFFGPTIFRLCEQGTDVHILCL----SNGNFEGKGQVRRKELWSACQE 534
D C FF + + DV+IL L S+GN +G Q LW A E
Sbjct: 505 DACFFFADNLVVVDHNNGDVYILSLHDEYSSGNGDGDYQNSIHSLWLANTE 555
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 428 LKIVGPKNMHSSSGCAITMSTLFAPSA 348
L +V PKN S G A +MST APS+
Sbjct: 191 LGVVSPKNSLSILGAAPSMSTAAAPSS 217
>06_01_1105 +
9102059-9102167,9103770-9103907,9104125-9104267,
9104362-9104515,9104610-9104839,9105382-9105471,
9105606-9105779,9105873-9106010,9106212-9106349,
9106450-9106511,9106744-9106972,9108531-9109364
Length = 812
Score = 27.5 bits (58), Expect = 9.2
Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 7/105 (6%)
Frame = +1
Query: 247 NFALYICAWVLSYLLVCG-AVYRRYARKLPTRIRGALGAKRVLIVIAHPD---DECMFFG 414
NF L + AW + L CG V + A + P AL A ++L PD + FG
Sbjct: 217 NFPLLMFAWKVGPALACGNTVVLKTAEQTPL---SALFASKLLHEAGLPDGVVNVVSGFG 273
Query: 415 PTIFRLCEQGTDVHILCLSNGNFEGKGQVR---RKELWSACQELG 540
PT DV + + GK + R L S ELG
Sbjct: 274 PTAGAALASHMDVDKIAFTGSTDTGKVVLELAARSNLKSVTLELG 318
>03_06_0395 +
33616304-33616494,33616863-33617095,33617213-33617303,
33617882-33617930,33618123-33618214,33618285-33618398,
33618473-33619172,33619269-33619336,33619626-33619760,
33619862-33620079,33620169-33620593
Length = 771
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 422 IVGPKNMHSSSGCAITMSTLFAPSAPRILVGSFRA 318
+VG N + C IT T +AP L GS RA
Sbjct: 571 VVGVFNCQGAGWCRITKKTRVHDAAPGTLTGSVRA 605
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,616,060
Number of Sequences: 37544
Number of extensions: 277555
Number of successful extensions: 681
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -