Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23i04
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    79   5e-16
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    29   0.74 
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   3.0  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   3.0  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   5.2  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   6.9  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   6.9  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   6.9  
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc...    25   6.9  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    25   9.1  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    25   9.1  
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    25   9.1  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   9.1  

>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 79.0 bits (186), Expect = 5e-16
 Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
 Frame = +1

Query: 121 FARSWHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPMNDCGDVVVCINSREIALRGDEWR 300
           +A+ WH    K       A  I   LMG HKPIYHP  DCGDVVV  +  EI + G +  
Sbjct: 12  YAKVWHHVSAKNVPLGRLASQIATTLMGKHKPIYHPAADCGDVVVVTDCSEIGISGRKLE 71

Query: 301 KRAYFHHTGYPGG-ASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHTMQRLFIYPGEN 477
              Y+ H+G PG    WT+      +    ++++AV   +  N      M+RL+IY G  
Sbjct: 72  NHKYYSHSGQPGHLKEWTMEEMAAKRGHKDLLRRAVGGMLPRNKLWDRRMKRLYIYDGAE 131

Query: 478 VP 483
            P
Sbjct: 132 HP 133


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 118 TFARSWHIFDCKWQDPYESAHVIKKYLM 201
           T  ++W   D KW +P++  H +K +L+
Sbjct: 289 TTGQAWQFRDYKWSEPHQLFHHVKGFLV 316


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 309  LFPPHWIPWRCFVDFSMGVT*QGSNHDHKKSSVQSNDWKPSEASYN 446
            LF P  I +R   +F  G+  + SNHDH K    S   KP+ A  N
Sbjct: 905  LFTPEKI-YRKLREFRRGLEGK-SNHDHSKDRRHSRARKPAYADRN 948


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 154 WQDPYESAHVIKKYLMGMHKPIYHPM 231
           W+D Y++  ++K+Y      P Y P+
Sbjct: 425 WEDAYQTYQLLKEYESAFEAPAYGPI 450


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 228 YERLWRCCCLYK 263
           YE LWRC C+ K
Sbjct: 327 YETLWRCACIKK 338


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 315 PPHWIPWRCFVDFSMGV 365
           PP ++PW  F+ F +G+
Sbjct: 577 PPKFLPWVSFIGFVLGI 593


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 133 WHIFDCKWQ-DPYESAHVIKKYLMGMHKPI-YHPMNDCGDVVVCINSREIA 279
           W++ + K+  +P   + +  + L G+  P  Y   ND  D +VC  S  IA
Sbjct: 427 WYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIA 477


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 288 ASKSYLSTIYTDNNISTIVHRMVYGFV 208
           ASK ++  I   + +S  +  M+YGF+
Sbjct: 153 ASKDFIDLIGAHSEVSLFITPMIYGFI 179


>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 312 ISTFPPLVASKSYLSTIYTDN 250
           +S+FP LV+ KS  +T+ +DN
Sbjct: 33  LSSFPALVSEKSQNTTVESDN 53


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 379 PTMIIKKAVYRAMTGNLQRRHTMQRLFIYPGENV 480
           P+ I K  ++R    N   RH ++ LF YPG+ V
Sbjct: 278 PSWITKDDLFRGPLVN--HRHLIKILFQYPGQTV 309


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 364 LHNKDPTMIIKKAVYRAMTGNLQRRHTMQRLFIYPGENVPEDV 492
           +H  D T ++  A    +   L  + T  + +IYP   VPE +
Sbjct: 517 VHFNDDTSLLFSADEEVVEYALHPKDTEIKPYIYPASKVPESI 559


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 190 FL*RERIHKDLAICSRICANYEQMLPIAVLVSLLTLYILMLR 65
           F+ RERIH++ A  +     +  +L   +LVS+    I  L+
Sbjct: 149 FVARERIHRNTAESTNDRVKWWSILQTVILVSVCVFQIFYLK 190


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -2

Query: 300 PPLVASKSYLSTIYTDNNISTIVHRMVYGFVHAHQIFFY 184
           PP   S  YL+  Y    I T  H      V A Q+ FY
Sbjct: 493 PPFRYSLKYLTKKYLGTTIQTSTHDSEEDAVSALQLVFY 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,225
Number of Sequences: 5004
Number of extensions: 62123
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)