Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23i04
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0409 + 3625071-3625228,3625829-3625905,3626310-3626889,362... 73 1e-13
05_03_0120 - 8597333-8597554,8599413-8599524,8599607-8599773,859... 72 4e-13
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 58 6e-09
11_04_0143 + 14034141-14034257,14034349-14034594,14034797-14035711 30 1.3
03_05_0614 - 26129627-26129784,26130110-26130282,26131236-261312... 28 5.4
06_03_1068 - 27341103-27341444,27341689-27341929,27342030-273423... 27 9.4
01_06_1020 + 33878391-33878582,33879194-33879271,33879363-338795... 27 9.4
>08_01_0409 +
3625071-3625228,3625829-3625905,3626310-3626889,
3626974-3627111,3627318-3627387,3627449-3627933,
3628681-3628890,3629259-3629326,3629855-3629961,
3630275-3630346,3630448-3630614,3630709-3630820,
3631464-3631650,3632174-3632286
Length = 847
Score = 73.3 bits (172), Expect = 1e-13
Identities = 40/117 (34%), Positives = 59/117 (50%)
Frame = +1
Query: 133 WHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPMNDCGDVVVCINSREIALRGDEWRKRAY 312
W +FD K Q A I L G KP Y P + GD+ V +N+++I++ G + + Y
Sbjct: 647 WRVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENGDMCVVLNAKDISVTGRKMTDKIY 706
Query: 313 FHHTGYPGGASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHTMQRLFIYPGENVP 483
+ HTGY G + KDPT +I+KAV R + N R ++L I+ G P
Sbjct: 707 YWHTGYIGHLKERRLKDQMEKDPTEVIRKAVMRMLPRNRLRDDRDRKLRIFSGSEHP 763
>05_03_0120 -
8597333-8597554,8599413-8599524,8599607-8599773,
8599857-8599928,8600748-8600780,8601051-8601089
Length = 214
Score = 71.7 bits (168), Expect = 4e-13
Identities = 40/117 (34%), Positives = 58/117 (49%)
Frame = +1
Query: 133 WHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPMNDCGDVVVCINSREIALRGDEWRKRAY 312
W +FD K Q A I L G KP Y P + GD+ V +N+++I++ G + + Y
Sbjct: 40 WRVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENGDMCVVLNAKDISVTGRKMTDKIY 99
Query: 313 FHHTGYPGGASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHTMQRLFIYPGENVP 483
+ HTGY G + KDPT I+KAV R + N R ++L I+ G P
Sbjct: 100 YWHTGYIGHLKERRLKDQMEKDPTEAIRKAVMRMLPRNRLRDDRDRKLRIFSGNEHP 156
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 58.0 bits (134), Expect = 6e-09
Identities = 35/137 (25%), Positives = 61/137 (44%)
Frame = +1
Query: 118 TFARSWHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPMNDCGDVVVCINSREIALRGDEW 297
T ++W++ D + A I ++ G ++ Y P D G VV +N+ ++A+ G +
Sbjct: 534 TTEKTWYVVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKR 593
Query: 298 RKRAYFHHTGYPGGASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHTMQRLFIYPGEN 477
++ Y H+G PGG +L + P II+ AV + R L +Y G
Sbjct: 594 SQKLYRRHSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYKGAE 653
Query: 478 VPEDVLQNVTNQIRQIR 528
P + + V I+ R
Sbjct: 654 HPHEAQKPVPLPIKDKR 670
>11_04_0143 + 14034141-14034257,14034349-14034594,14034797-14035711
Length = 425
Score = 30.3 bits (65), Expect = 1.3
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Frame = +1
Query: 301 KRAYFHHTGYPGGASWTLAWELHNKDPTMIIKKAVYRAMTG-NLQRRHTMQRL---FIYP 468
KR +HH GG + +A L NK+ + K V M N+Q +H ++
Sbjct: 162 KRKKWHHRLGSGGYARKIA--LWNKEDEEMKKAGVPVPMEEWNIQSKHWVKERTPKITSE 219
Query: 469 GENVPEDV-LQNVTNQIRQIRYVPKRLDHIPEEEVKKLSQSHG 594
G+ + ED LQ V ++I + K+ + IP+ E LSQ+ G
Sbjct: 220 GKVLFEDPELQGVADKIEDLSSKEKKGEFIPQREKDVLSQALG 262
>03_05_0614 -
26129627-26129784,26130110-26130282,26131236-26131284,
26132649-26132697,26132987-26133082
Length = 174
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 244 DVVVCINSREIALRGDEWRKRAYFHHTGYPGGASW 348
D V+ I + RG+EW ++ HH P G W
Sbjct: 104 DTVITIEEK----RGEEWCRKKLGHHAASPKGPCW 134
>06_03_1068 -
27341103-27341444,27341689-27341929,27342030-27342343,
27342672-27343805
Length = 676
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 331 PGGASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHTMQRLFIYPGENV-PEDVLQNVT 507
P G + L W + DPT+I ++ ++ + G L R + +F P LQ +T
Sbjct: 499 PRGQARGLTWFIPMDDPTLISRQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQIT 558
Query: 508 NQIRQI 525
+Q+
Sbjct: 559 GLAKQM 564
>01_06_1020 +
33878391-33878582,33879194-33879271,33879363-33879524,
33879789-33880106,33880477-33880671
Length = 314
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 448 QRLFIYPGENVPEDVLQNVTNQIRQIRYVPKRLDHIPEEEVKKLSQSH-GIPR 603
+R+ + NVP D QN+T+ R I +P + H+ K + SH G P+
Sbjct: 17 KRVLLRADLNVPLDASQNITDDTRVIAAIP-TIKHLIGNGAKVILCSHLGRPK 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,627,390
Number of Sequences: 37544
Number of extensions: 379321
Number of successful extensions: 903
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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