Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23i04
(637 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC021744-1|AAH21744.1| 178|Homo sapiens mitochondrial ribosomal... 171 1e-42
BC009190-1|AAH09190.1| 178|Homo sapiens mitochondrial ribosomal... 171 1e-42
AB049640-1|BAB40845.1| 178|Homo sapiens mitochondrial ribosomal... 171 1e-42
AF112214-1|AAF17202.1| 172|Homo sapiens ribosomal protein L13 p... 166 5e-41
AK054584-1|BAB70766.1| 284|Homo sapiens protein ( Homo sapiens ... 30 6.0
AF490838-1|AAM33253.1| 319|Homo sapiens RGS3 isoform RGS3S prot... 30 6.0
Z84487-2|CAI42674.1| 2492|Homo sapiens alpha thalassemia/mental ... 30 7.9
Z84487-1|CAI42675.1| 2454|Homo sapiens alpha thalassemia/mental ... 30 7.9
U97103-1|AAC51657.1| 2375|Homo sapiens X-linked nuclear protein ... 30 7.9
U75653-1|AAC51655.1| 2492|Homo sapiens zinc finger helicase prot... 30 7.9
U72938-1|AAB49971.2| 2454|Homo sapiens putative DNA dependent AT... 30 7.9
U72937-1|AAB49970.2| 2492|Homo sapiens putative DNA dependent AT... 30 7.9
U72936-1|AAB49969.1| 2288|Homo sapiens putative DNA dependent AT... 30 7.9
U72935-3|AAB40700.1| 2288|Homo sapiens putative DNA dependent AT... 30 7.9
U72935-2|AAB40699.1| 2337|Homo sapiens putative DNA dependent AT... 30 7.9
U72935-1|AAB40698.1| 2375|Homo sapiens putative DNA dependent AT... 30 7.9
U09820-1|AAC50069.1| 1641|Homo sapiens helicase II protein. 30 7.9
L34363-1|AAA20872.1| 1298|Homo sapiens X-linked nuclear protein ... 30 7.9
EF467914-1|ABO43036.1| 2492|Homo sapiens alpha thalassemia/menta... 30 7.9
AL121874-2|CAI40710.1| 2492|Homo sapiens alpha thalassemia/menta... 30 7.9
AL121874-1|CAB90351.2| 2454|Homo sapiens alpha thalassemia/menta... 30 7.9
AL109753-2|CAI43115.1| 2492|Homo sapiens alpha thalassemia/menta... 30 7.9
AL109753-1|CAI43116.1| 2454|Homo sapiens alpha thalassemia/menta... 30 7.9
AB102641-1|BAC81110.1| 2492|Homo sapiens ATRX protein. 30 7.9
>BC021744-1|AAH21744.1| 178|Homo sapiens mitochondrial ribosomal
protein L13 protein.
Length = 178
Score = 171 bits (417), Expect = 1e-42
Identities = 74/161 (45%), Positives = 107/161 (66%)
Frame = +1
Query: 88 SAAKRVQQWATFARSWHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPMNDCGDVVVCINS 267
S ++ QQWATFAR W++ D K Q P + A + L G+HKP+YH ++DCGD VV +N+
Sbjct: 3 SFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNT 62
Query: 268 REIALRGDEWRKRAYFHHTGYPGGASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHTM 447
R IA G++W ++ Y HTGYPGG A +LH +DP I+K A+Y + NL RR M
Sbjct: 63 RHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMM 122
Query: 448 QRLFIYPGENVPEDVLQNVTNQIRQIRYVPKRLDHIPEEEV 570
+RL ++P E +PED+L+N+ ++ Q R +PKRLD +EE+
Sbjct: 123 ERLHLFPDEYIPEDILKNLVEELPQPRKIPKRLDEYTQEEI 163
>BC009190-1|AAH09190.1| 178|Homo sapiens mitochondrial ribosomal
protein L13 protein.
Length = 178
Score = 171 bits (417), Expect = 1e-42
Identities = 74/161 (45%), Positives = 107/161 (66%)
Frame = +1
Query: 88 SAAKRVQQWATFARSWHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPMNDCGDVVVCINS 267
S ++ QQWATFAR W++ D K Q P + A + L G+HKP+YH ++DCGD VV +N+
Sbjct: 3 SFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNT 62
Query: 268 REIALRGDEWRKRAYFHHTGYPGGASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHTM 447
R IA G++W ++ Y HTGYPGG A +LH +DP I+K A+Y + NL RR M
Sbjct: 63 RHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMM 122
Query: 448 QRLFIYPGENVPEDVLQNVTNQIRQIRYVPKRLDHIPEEEV 570
+RL ++P E +PED+L+N+ ++ Q R +PKRLD +EE+
Sbjct: 123 ERLHLFPDEYIPEDILKNLVEELPQPRKIPKRLDEYTQEEI 163
>AB049640-1|BAB40845.1| 178|Homo sapiens mitochondrial ribosomal
protein L13 (L13mt) protein.
Length = 178
Score = 171 bits (417), Expect = 1e-42
Identities = 74/161 (45%), Positives = 107/161 (66%)
Frame = +1
Query: 88 SAAKRVQQWATFARSWHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPMNDCGDVVVCINS 267
S ++ QQWATFAR W++ D K Q P + A + L G+HKP+YH ++DCGD VV +N+
Sbjct: 3 SFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNT 62
Query: 268 REIALRGDEWRKRAYFHHTGYPGGASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHTM 447
R IA G++W ++ Y HTGYPGG A +LH +DP I+K A+Y + NL RR M
Sbjct: 63 RHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMM 122
Query: 448 QRLFIYPGENVPEDVLQNVTNQIRQIRYVPKRLDHIPEEEV 570
+RL ++P E +PED+L+N+ ++ Q R +PKRLD +EE+
Sbjct: 123 ERLHLFPDEYIPEDILKNLVEELPQPRKIPKRLDEYTQEEI 163
>AF112214-1|AAF17202.1| 172|Homo sapiens ribosomal protein L13
protein.
Length = 172
Score = 166 bits (404), Expect = 5e-41
Identities = 72/154 (46%), Positives = 103/154 (66%)
Frame = +1
Query: 88 SAAKRVQQWATFARSWHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPMNDCGDVVVCINS 267
S ++ QQWATFAR W++ D K Q P + A + L G+HKP+YH ++DCGD VV +N+
Sbjct: 3 SFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNT 62
Query: 268 REIALRGDEWRKRAYFHHTGYPGGASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHTM 447
R IA G++W ++ Y HTGYPGG A +LH +DP I+K A+Y + NL RR M
Sbjct: 63 RHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMM 122
Query: 448 QRLFIYPGENVPEDVLQNVTNQIRQIRYVPKRLD 549
+RL ++P E +PED+L+N+ ++ Q R +PKRLD
Sbjct: 123 ERLHLFPDEYIPEDILKNLVEELPQPRKIPKRLD 156
>AK054584-1|BAB70766.1| 284|Homo sapiens protein ( Homo sapiens
cDNA FLJ30022 fis, clone 3NB692001002, highly similar to
REGULATOR OF G-PROTEIN SIGNALING 3. ).
Length = 284
Score = 30.3 bits (65), Expect = 6.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 337 GASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHTMQ 450
GAS W PT +++ +Y GNLQRRHTM+
Sbjct: 76 GASCRPIWGPKVGGPTEMLR-GMYLTRNGNLQRRHTMK 112
>AF490838-1|AAM33253.1| 319|Homo sapiens RGS3 isoform RGS3S
protein.
Length = 319
Score = 30.3 bits (65), Expect = 6.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 337 GASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHTMQ 450
GAS W PT +++ +Y GNLQRRHTM+
Sbjct: 103 GASCRPIWGPKVGGPTEMLR-GMYLTRNGNLQRRHTMK 139
>Z84487-2|CAI42674.1| 2492|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2492
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 2134 IFDASWNPSYDIQSIFRVYRFGQTKPVY 2161
>Z84487-1|CAI42675.1| 2454|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2454
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 2096 IFDASWNPSYDIQSIFRVYRFGQTKPVY 2123
>U97103-1|AAC51657.1| 2375|Homo sapiens X-linked nuclear protein
protein.
Length = 2375
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 2017 IFDASWNPSYDIQSIFRVYRFGQTKPVY 2044
>U75653-1|AAC51655.1| 2492|Homo sapiens zinc finger helicase protein.
Length = 2492
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 2134 IFDASWNPSYDIQSIFRVYRFGQTKPVY 2161
>U72938-1|AAB49971.2| 2454|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2454
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 2096 IFDASWNPSYDIQSIFRVYRFGQTKPVY 2123
>U72937-1|AAB49970.2| 2492|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2492
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 2134 IFDASWNPSYDIQSIFRVYRFGQTKPVY 2161
>U72936-1|AAB49969.1| 2288|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2288
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 1930 IFDASWNPSYDIQSIFRVYRFGQTKPVY 1957
>U72935-3|AAB40700.1| 2288|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2288
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 1930 IFDASWNPSYDIQSIFRVYRFGQTKPVY 1957
>U72935-2|AAB40699.1| 2337|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2337
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 1979 IFDASWNPSYDIQSIFRVYRFGQTKPVY 2006
>U72935-1|AAB40698.1| 2375|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2375
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 2017 IFDASWNPSYDIQSIFRVYRFGQTKPVY 2044
>U09820-1|AAC50069.1| 1641|Homo sapiens helicase II protein.
Length = 1641
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 1276 IFDASWNPSYDIQSIFRVYRFGQTKPVY 1303
>L34363-1|AAA20872.1| 1298|Homo sapiens X-linked nuclear protein
protein.
Length = 1298
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 995 IFDASWNPSYDIQSIFRVYRFGQTKPVY 1022
>EF467914-1|ABO43036.1| 2492|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked protein.
Length = 2492
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 2134 IFDASWNPSYDIQSIFRVYRFGQTKPVY 2161
>AL121874-2|CAI40710.1| 2492|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2492
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 2134 IFDASWNPSYDIQSIFRVYRFGQTKPVY 2161
>AL121874-1|CAB90351.2| 2454|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2454
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 2096 IFDASWNPSYDIQSIFRVYRFGQTKPVY 2123
>AL109753-2|CAI43115.1| 2492|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2492
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 2134 IFDASWNPSYDIQSIFRVYRFGQTKPVY 2161
>AL109753-1|CAI43116.1| 2454|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2454
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 2096 IFDASWNPSYDIQSIFRVYRFGQTKPVY 2123
>AB102641-1|BAC81110.1| 2492|Homo sapiens ATRX protein.
Length = 2492
Score = 29.9 bits (64), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 139 IFDCKWQDPYESAHVIKKYLMGMHKPIY 222
IFD W Y+ + + Y G KP+Y
Sbjct: 2134 IFDASWNPSYDIQSIFRVYRFGQTKPVY 2161
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,128,646
Number of Sequences: 237096
Number of extensions: 2168733
Number of successful extensions: 4064
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4062
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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