Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23i04
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.3  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    22   4.3  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   4.3  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.6  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 489 VFRYILSRVYKKTLHCMTPLKVSSHCSVHCFFY 391
           +F Y L+ +YKK    + PL +        FFY
Sbjct: 282 LFYYQLTDLYKKIKKAVPPLSLHGQLLWREFFY 314


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 181 VIKKYLMGMHKPIYHPMNDCGDV 249
           +I+ Y  G  K   HP  D GDV
Sbjct: 68  IIEDYHGGFKKTDKHPPKDFGDV 90


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 181 VIKKYLMGMHKPIYHPMNDCGDV 249
           +I+ Y  G  K   HP  D GDV
Sbjct: 84  IIEDYHGGFKKTDKHPPKDFGDV 106


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -2

Query: 159 LPFAVEYVPTTSKCCPLLYS-FRC 91
           L    E +PTTS   PL+ S F C
Sbjct: 240 LNLVAESMPTTSDAVPLIGSYFNC 263


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -2

Query: 159 LPFAVEYVPTTSKCCPLLYS-FRC 91
           L    E +PTTS   PL+ S F C
Sbjct: 240 LNLVAESMPTTSDAVPLIGSYFNC 263


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -2

Query: 159 LPFAVEYVPTTSKCCPLLYS-FRC 91
           L    E +PTTS   PL+ S F C
Sbjct: 240 LNLVAESMPTTSDAVPLIGSYFNC 263


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -2

Query: 159 LPFAVEYVPTTSKCCPLLYS-FRC 91
           L    E +PTTS   PL+ S F C
Sbjct: 308 LNLVAESMPTTSDAVPLIGSYFNC 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,650
Number of Sequences: 438
Number of extensions: 4435
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)